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Friday July 25, 2008


 

We can help you!

Some of our recent research has involved using our CEGMA software pipeline to study the many whole genome shotgun (WGS) genome sequences that are being produced. In a recently submitted manuscript that looks at the utility and completeness of WGS genomes, we have shown that the genome annotations that accompany genome sequences frequently miss important, and highly-conserved genes. As a free service, we will run our CEGMA pipeline software against any (eukaryotic) genome sequence to:
  • assess how many genes are likely to be present/absent in that assembly and
  • accurately predict the structures of a set of conserved genes that we believe are present in all eukaryotes.
Please email korflab @ ucdavis.edu for more information.

Korf Lab - Software & Databases

  • CEGMA - Core Eukaryotic Genes Mapping Approach. Software and datasets provided.
  • Genome completeness - Using CEGMA to investigate utility of draft genome sequences
  • SNAP (Semi-HMM-based Nucleic Acid Parser) gene prediction tool
  • IMEter A web tool to calculate the enhancing ability of any specified intron sequence


 ~ Links

Genome Center Genome Center
The place where we work

GOLD
The Genomes Online Database

MCB
Department of Molecular & Cellular Biology


Contact us
Please email us if you have any questions.
This page last modified Monday April 28, 2008
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