We can help you!
Some of our recent research has involved using our CEGMA software
pipeline to study the many whole genome shotgun (WGS) genome sequences that are being produced.
In a recently submitted manuscript that looks at the utility
and completeness of WGS genomes, we have shown that the genome annotations that accompany
genome sequences frequently miss important, and highly-conserved genes.
As a free service, we will run our CEGMA pipeline software against any (eukaryotic) genome sequence
to:
- assess how many genes are likely to be present/absent in that assembly and
- accurately predict the structures of a set of conserved genes that we believe are present in all eukaryotes.
Please email korflab @ ucdavis.edu for more information.
Korf Lab - Software & Databases
- CEGMA - Core Eukaryotic Genes Mapping Approach. Software and datasets provided.
- Genome completeness - Using CEGMA to investigate utility of draft genome sequences
- SNAP (Semi-HMM-based Nucleic Acid Parser) gene prediction tool
- IMEter A web tool to calculate the enhancing ability of any specified intron sequence. You can also download a commandline version
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Genome Center
The place where we work
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GOLD
The Genomes Online Database |
MCB
Department of Molecular & Cellular Biology |
Contact us
Please email us if you have any questions.
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