Korf Lab :
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Xgrid
We can help you!
Some of our recent research has involved using our CEGMA software
pipeline to study the many whole genome shotgun (WGS) genome sequences that are being produced.
In a recently submitted manuscript that looks at the utility
and completeness of WGS genomes, we have shown that the genome annotations that accompany
genome sequences frequently miss important, and highly-conserved genes.
As a free service, we will run our CEGMA pipeline software against any (eukaryotic) genome sequence
to:
- 1) assess how many genes are likely to be present/absent in that assembly and
- 2) accurately predict the structures of a set of conserved genes that we believe are present in all eukaryotes.
Please email ifkorf@ucdavis.edu for more information.
Korf Lab - Databases accompanying publications
- CEGMA - Core Eukaryotic Genes Mapping Approach. Software and datasets provided.
G. Parra, K. Bradnam, and I. Korf "CEGMA": a pipeline to accurately annotate core genes in eukaryotic genomes