---------------- Information for assembly 'bird_10C_scaffolds.fa.gz' ---------------- Assumed genome size (Mbp) 1200.00 Number of scaffolds 92853 Total size of scaffolds 1152568402 Total scaffold length as percentage of assumed genome size 96.0% Longest scaffold 34038032 Shortest scaffold 500 Number of scaffolds > 1K nt 17827 19.2% Number of scaffolds > 10K nt 3995 4.3% Number of scaffolds > 100K nt 966 1.0% Number of scaffolds > 1M nt 199 0.2% Number of scaffolds > 10M nt 13 0.0% Mean scaffold size 12413 Median scaffold size 695 N50 scaffold length 2800925 L50 scaffold count 87 NG50 scaffold length 2518389 LG50 scaffold count 96 N50 scaffold - NG50 scaffold length difference 282536 scaffold %A 27.20 scaffold %C 19.10 scaffold %G 19.08 scaffold %T 27.17 scaffold %N 7.45 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 94.0% Percentage of assembly in unscaffolded contigs 6.0% Average number of contigs per scaffold 2.1 Average length of break (>25 Ns) between contigs in scaffold 874 Number of contigs 191111 Number of contigs in scaffolds 104797 Number of contigs not in scaffolds 86314 Total size of contigs 1066654766 Longest contig 235482 Shortest contig 111 Number of contigs > 1K nt 106827 55.9% Number of contigs > 10K nt 31686 16.6% Number of contigs > 100K nt 144 0.1% Number of contigs > 1M nt 0 0.0% Number of contigs > 10M nt 0 0.0% Mean contig size 5581 Median contig size 1210 N50 contig length 18175 L50 contig count 16267 NG50 contig length 15382 LG50 contig count 20253 N50 contig - NG50 contig length difference 2793 contig %A 29.39 contig %C 20.64 contig %G 20.61 contig %T 29.35 contig %N 0.00 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 ---------------- Information for assembly 'bird_11C_scaffolds.fa.gz' ---------------- Assumed genome size (Mbp) 1200.00 Number of scaffolds 4341 Total size of scaffolds 1148183934 Total scaffold length as percentage of assumed genome size 95.7% Longest scaffold 65896851 Shortest scaffold 959 Number of scaffolds > 1K nt 4335 99.9% Number of scaffolds > 10K nt 1505 34.7% Number of scaffolds > 100K nt 456 10.5% Number of scaffolds > 1M nt 144 3.3% Number of scaffolds > 10M nt 29 0.7% Mean scaffold size 264498 Median scaffold size 4739 N50 scaffold length 14948402 L50 scaffold count 19 NG50 scaffold length 14454701 LG50 scaffold count 20 N50 scaffold - NG50 scaffold length difference 493701 scaffold %A 28.00 scaffold %C 19.77 scaffold %G 19.73 scaffold %T 27.94 scaffold %N 4.26 scaffold %non-ACGTN 0.29 Number of scaffold non-ACGTN nt 3373027 Percentage of assembly in scaffolded contigs 99.2% Percentage of assembly in unscaffolded contigs 0.8% Average number of contigs per scaffold 12.5 Average length of break (>25 Ns) between contigs in scaffold 978 Number of contigs 54371 Number of contigs in scaffolds 51986 Number of contigs not in scaffolds 2385 Total size of contigs 1099243305 Longest contig 714557 Shortest contig 9 Number of contigs > 1K nt 51956 95.6% Number of contigs > 10K nt 22757 41.9% Number of contigs > 100K nt 2022 3.7% Number of contigs > 1M nt 0 0.0% Number of contigs > 10M nt 0 0.0% Mean contig size 20217 Median contig size 6914 N50 contig length 57060 L50 contig count 4867 NG50 contig length 49570 LG50 contig count 5814 N50 contig - NG50 contig length difference 7490 contig %A 29.25 contig %C 20.65 contig %G 20.61 contig %T 29.19 contig %N 0.00 contig %non-ACGTN 0.31 Number of contig non-ACGTN nt 3373027 ---------------- Information for assembly 'bird_12C_scaffolds.fa.gz' ---------------- Assumed genome size (Mbp) 1200.00 Number of scaffolds 151393 Total size of scaffolds 1172984400 Total scaffold length as percentage of assumed genome size 97.7% Longest scaffold 66719718 Shortest scaffold 100 Number of scaffolds > 1K nt 1994 1.3% Number of scaffolds > 10K nt 563 0.4% Number of scaffolds > 100K nt 216 0.1% Number of scaffolds > 1M nt 127 0.1% Number of scaffolds > 10M nt 35 0.0% Mean scaffold size 7748 Median scaffold size 140 N50 scaffold length 13500745 L50 scaffold count 24 NG50 scaffold length 13157455 LG50 scaffold count 25 N50 scaffold - NG50 scaffold length difference 343290 scaffold %A 28.25 scaffold %C 20.10 scaffold %G 20.09 scaffold %T 28.24 scaffold %N 3.32 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 97.9% Percentage of assembly in unscaffolded contigs 2.1% Average number of contigs per scaffold 1.6 Average length of break (>25 Ns) between contigs in scaffold 412 Number of contigs 245857 Number of contigs in scaffolds 96263 Number of contigs not in scaffolds 149594 Total size of contigs 1134047611 Longest contig 666285 Shortest contig 2 Number of contigs > 1K nt 65777 26.8% Number of contigs > 10K nt 26707 10.9% Number of contigs > 100K nt 1255 0.5% Number of contigs > 1M nt 0 0.0% Number of contigs > 10M nt 0 0.0% Mean contig size 4613 Median contig size 167 N50 contig length 38139 L50 contig count 7787 NG50 contig length 34710 LG50 contig count 8694 N50 contig - NG50 contig length difference 3429 contig %A 29.23 contig %C 20.79 contig %G 20.78 contig %T 29.21 contig %N 0.00 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 ---------------- Information for assembly 'bird_13E_scaffolds.fa.gz' ---------------- Assumed genome size (Mbp) 1200.00 Number of scaffolds 151393 Total size of scaffolds 1169793729 Total scaffold length as percentage of assumed genome size 97.5% Longest scaffold 66552409 Shortest scaffold 100 Number of scaffolds > 1K nt 1990 1.3% Number of scaffolds > 10K nt 563 0.4% Number of scaffolds > 100K nt 216 0.1% Number of scaffolds > 1M nt 127 0.1% Number of scaffolds > 10M nt 35 0.0% Mean scaffold size 7727 Median scaffold size 140 N50 scaffold length 13498806 L50 scaffold count 24 NG50 scaffold length 13114357 LG50 scaffold count 25 N50 scaffold - NG50 scaffold length difference 384449 scaffold %A 28.28 scaffold %C 20.11 scaffold %G 20.10 scaffold %T 28.26 scaffold %N 3.26 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 97.8% Percentage of assembly in unscaffolded contigs 2.2% Average number of contigs per scaffold 1.4 Average length of break (>25 Ns) between contigs in scaffold 620 Number of contigs 212798 Number of contigs in scaffolds 63090 Number of contigs not in scaffolds 149708 Total size of contigs 1131717026 Longest contig 666285 Shortest contig 2 Number of contigs > 1K nt 45391 21.3% Number of contigs > 10K nt 24025 11.3% Number of contigs > 100K nt 1745 0.8% Number of contigs > 1M nt 0 0.0% Number of contigs > 10M nt 0 0.0% Mean contig size 5318 Median contig size 155 N50 contig length 52272 L50 contig count 6138 NG50 contig length 48709 LG50 contig count 6814 N50 contig - NG50 contig length difference 3563 contig %A 29.23 contig %C 20.79 contig %G 20.77 contig %T 29.21 contig %N 0.00 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 ---------------- Information for assembly 'bird_14E_scaffolds.fa.gz' ---------------- Assumed genome size (Mbp) 1200.00 Number of scaffolds 151393 Total size of scaffolds 1169860945 Total scaffold length as percentage of assumed genome size 97.5% Longest scaffold 66566469 Shortest scaffold 100 Number of scaffolds > 1K nt 1986 1.3% Number of scaffolds > 10K nt 563 0.4% Number of scaffolds > 100K nt 216 0.1% Number of scaffolds > 1M nt 127 0.1% Number of scaffolds > 10M nt 35 0.0% Mean scaffold size 7727 Median scaffold size 140 N50 scaffold length 13497021 L50 scaffold count 24 NG50 scaffold length 13115626 LG50 scaffold count 25 N50 scaffold - NG50 scaffold length difference 381395 scaffold %A 28.28 scaffold %C 20.11 scaffold %G 20.10 scaffold %T 28.26 scaffold %N 3.24 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 97.8% Percentage of assembly in unscaffolded contigs 2.2% Average number of contigs per scaffold 1.4 Average length of break (>25 Ns) between contigs in scaffold 623 Number of contigs 212203 Number of contigs in scaffolds 62331 Number of contigs not in scaffolds 149872 Total size of contigs 1131967723 Longest contig 500974 Shortest contig 31 Number of contigs > 1K nt 46822 22.1% Number of contigs > 10K nt 24404 11.5% Number of contigs > 100K nt 1716 0.8% Number of contigs > 1M nt 0 0.0% Number of contigs > 10M nt 0 0.0% Mean contig size 5334 Median contig size 157 N50 contig length 51034 L50 contig count 6296 NG50 contig length 47356 LG50 contig count 6988 N50 contig - NG50 contig length difference 3678 contig %A 29.23 contig %C 20.79 contig %G 20.77 contig %T 29.21 contig %N 0.00 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 ---------------- Information for assembly 'bird_15C_scaffolds.fa.gz' ---------------- Assumed genome size (Mbp) 1200.00 Number of scaffolds 2044334 Total size of scaffolds 1155594232 Total scaffold length as percentage of assumed genome size 96.3% Longest scaffold 203381 Shortest scaffold 59 Number of scaffolds > 1K nt 287546 14.1% Number of scaffolds > 10K nt 8588 0.4% Number of scaffolds > 100K nt 2 0.0% Number of scaffolds > 1M nt 0 0.0% Number of scaffolds > 10M nt 0 0.0% Mean scaffold size 565 Median scaffold size 117 N50 scaffold length 2759 L50 scaffold count 104059 NG50 scaffold length 2611 LG50 scaffold count 112330 N50 scaffold - NG50 scaffold length difference 148 scaffold %A 29.36 scaffold %C 20.70 scaffold %G 20.57 scaffold %T 29.37 scaffold %N 0.00 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 0.0% Percentage of assembly in unscaffolded contigs 100.0% Average number of contigs per scaffold 1.0 Average length of break (>25 Ns) between contigs in scaffold 0 Number of contigs 2044334 Number of contigs in scaffolds 0 Number of contigs not in scaffolds 2044334 Total size of contigs 1155594232 Longest contig 203381 Shortest contig 59 Number of contigs > 1K nt 287546 14.1% Number of contigs > 10K nt 8588 0.4% Number of contigs > 100K nt 2 0.0% Number of contigs > 1M nt 0 0.0% Number of contigs > 10M nt 0 0.0% Mean contig size 565 Median contig size 117 N50 contig length 2759 L50 contig count 104059 NG50 contig length 2611 LG50 contig count 112330 N50 contig - NG50 contig length difference 148 contig %A 29.36 contig %C 20.70 contig %G 20.57 contig %T 29.37 contig %N 0.00 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 ---------------- Information for assembly 'bird_1C_scaffolds.fa.gz' ---------------- Assumed genome size (Mbp) 1200.00 Number of scaffolds 293817 Total size of scaffolds 1373689310 Total scaffold length as percentage of assumed genome size 114.5% Longest scaffold 19403401 Shortest scaffold 300 Number of scaffolds > 1K nt 66754 22.7% Number of scaffolds > 10K nt 5329 1.8% Number of scaffolds > 100K nt 1315 0.4% Number of scaffolds > 1M nt 244 0.1% Number of scaffolds > 10M nt 7 0.0% Mean scaffold size 4675 Median scaffold size 644 N50 scaffold length 905786 L50 scaffold count 284 NG50 scaffold length 1223532 LG50 scaffold count 200 N50 scaffold - NG50 scaffold length difference 317746 scaffold %A 27.86 scaffold %C 19.87 scaffold %G 19.87 scaffold %T 27.87 scaffold %N 4.52 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 82.4% Percentage of assembly in unscaffolded contigs 17.6% Average number of contigs per scaffold 1.2 Average length of break (>25 Ns) between contigs in scaffold 1151 Number of contigs 347746 Number of contigs in scaffolds 64648 Number of contigs not in scaffolds 283098 Total size of contigs 1311587477 Longest contig 1468603 Shortest contig 5 Number of contigs > 1K nt 108929 31.3% Number of contigs > 10K nt 19079 5.5% Number of contigs > 100K nt 2303 0.7% Number of contigs > 1M nt 4 0.0% Number of contigs > 10M nt 0 0.0% Mean contig size 3772 Median contig size 720 N50 contig length 50960 L50 contig count 5357 NG50 contig length 61840 LG50 contig count 4363 N50 contig - NG50 contig length difference 10880 contig %A 29.18 contig %C 20.81 contig %G 20.81 contig %T 29.19 contig %N 0.00 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 ---------------- Information for assembly 'bird_2C_scaffolds.fa.gz' ---------------- Assumed genome size (Mbp) 1200.00 Number of scaffolds 56982 Total size of scaffolds 1330191990 Total scaffold length as percentage of assumed genome size 110.8% Longest scaffold 68648150 Shortest scaffold 46 Number of scaffolds > 1K nt 15692 27.5% Number of scaffolds > 10K nt 4198 7.4% Number of scaffolds > 100K nt 535 0.9% Number of scaffolds > 1M nt 104 0.2% Number of scaffolds > 10M nt 38 0.1% Mean scaffold size 23344 Median scaffold size 444 N50 scaffold length 13048615 L50 scaffold count 26 NG50 scaffold length 16233753 LG50 scaffold count 22 N50 scaffold - NG50 scaffold length difference 3185138 scaffold %A 25.75 scaffold %C 18.47 scaffold %G 18.50 scaffold %T 25.78 scaffold %N 11.51 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 97.3% Percentage of assembly in unscaffolded contigs 2.7% Average number of contigs per scaffold 1.8 Average length of break (>25 Ns) between contigs in scaffold 3348 Number of contigs 102648 Number of contigs in scaffolds 54284 Number of contigs not in scaffolds 48364 Total size of contigs 1177260100 Longest contig 2740970 Shortest contig 46 Number of contigs > 1K nt 43152 42.0% Number of contigs > 10K nt 11320 11.0% Number of contigs > 100K nt 2760 2.7% Number of contigs > 1M nt 60 0.1% Number of contigs > 10M nt 0 0.0% Mean contig size 11469 Median contig size 732 N50 contig length 192005 L50 contig count 1391 NG50 contig length 184984 LG50 contig count 1451 N50 contig - NG50 contig length difference 7021 contig %A 29.09 contig %C 20.87 contig %G 20.91 contig %T 29.13 contig %N 0.01 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 ---------------- Information for assembly 'bird_3E_scaffolds.fa.gz' ---------------- Assumed genome size (Mbp) 1200.00 Number of scaffolds 56982 Total size of scaffolds 1331267718 Total scaffold length as percentage of assumed genome size 110.9% Longest scaffold 68694673 Shortest scaffold 46 Number of scaffolds > 1K nt 15692 27.5% Number of scaffolds > 10K nt 4197 7.4% Number of scaffolds > 100K nt 535 0.9% Number of scaffolds > 1M nt 104 0.2% Number of scaffolds > 10M nt 38 0.1% Mean scaffold size 23363 Median scaffold size 444 N50 scaffold length 13053499 L50 scaffold count 26 NG50 scaffold length 16248487 LG50 scaffold count 22 N50 scaffold - NG50 scaffold length difference 3194988 scaffold %A 25.71 scaffold %C 18.43 scaffold %G 18.47 scaffold %T 25.74 scaffold %N 11.65 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 97.3% Percentage of assembly in unscaffolded contigs 2.7% Average number of contigs per scaffold 1.9 Average length of break (>25 Ns) between contigs in scaffold 3137 Number of contigs 106358 Number of contigs in scaffolds 58048 Number of contigs not in scaffolds 48310 Total size of contigs 1176355499 Longest contig 1818675 Shortest contig 46 Number of contigs > 1K nt 46819 44.0% Number of contigs > 10K nt 13593 12.8% Number of contigs > 100K nt 3051 2.9% Number of contigs > 1M nt 18 0.0% Number of contigs > 10M nt 0 0.0% Mean contig size 11060 Median contig size 785 N50 contig length 134384 L50 contig count 2168 NG50 contig length 129582 LG50 contig count 2258 N50 contig - NG50 contig length difference 4802 contig %A 29.09 contig %C 20.86 contig %G 20.90 contig %T 29.13 contig %N 0.01 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 ---------------- Information for assembly 'bird_4C_scaffolds.fa.gz' ---------------- Assumed genome size (Mbp) 1200.00 Number of scaffolds 47279 Total size of scaffolds 1270995781 Total scaffold length as percentage of assumed genome size 105.9% Longest scaffold 3236250 Shortest scaffold 100 Number of scaffolds > 1K nt 20980 44.4% Number of scaffolds > 10K nt 5893 12.5% Number of scaffolds > 100K nt 2441 5.2% Number of scaffolds > 1M nt 229 0.5% Number of scaffolds > 10M nt 0 0.0% Mean scaffold size 26883 Median scaffold size 725 N50 scaffold length 567125 L50 scaffold count 631 NG50 scaffold length 609121 LG50 scaffold count 571 N50 scaffold - NG50 scaffold length difference 41996 scaffold %A 26.76 scaffold %C 19.21 scaffold %G 19.21 scaffold %T 26.77 scaffold %N 8.04 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 95.6% Percentage of assembly in unscaffolded contigs 4.4% Average number of contigs per scaffold 1.9 Average length of break (>25 Ns) between contigs in scaffold 2469 Number of contigs 88662 Number of contigs in scaffolds 49125 Number of contigs not in scaffolds 39537 Total size of contigs 1168804698 Longest contig 465622 Shortest contig 100 Number of contigs > 1K nt 60847 68.6% Number of contigs > 10K nt 28948 32.6% Number of contigs > 100K nt 1115 1.3% Number of contigs > 1M nt 0 0.0% Number of contigs > 10M nt 0 0.0% Mean contig size 13183 Median contig size 3388 N50 contig length 41118 L50 contig count 8258 NG50 contig length 39832 LG50 contig count 8643 N50 contig - NG50 contig length difference 1286 contig %A 29.10 contig %C 20.89 contig %G 20.89 contig %T 29.11 contig %N 0.00 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 ---------------- Information for assembly 'bird_5C_scaffolds.fa.gz' ---------------- Assumed genome size (Mbp) 1200.00 Number of scaffolds 1295897 Total size of scaffolds 1999929557 Total scaffold length as percentage of assumed genome size 166.7% Longest scaffold 4710042 Shortest scaffold 75 Number of scaffolds > 1K nt 97219 7.5% Number of scaffolds > 10K nt 42632 3.3% Number of scaffolds > 100K nt 1946 0.2% Number of scaffolds > 1M nt 90 0.0% Number of scaffolds > 10M nt 0 0.0% Mean scaffold size 1543 Median scaffold size 93 N50 scaffold length 34998 L50 scaffold count 9035 NG50 scaffold length 113799 LG50 scaffold count 1701 N50 scaffold - NG50 scaffold length difference 78801 scaffold %A 28.34 scaffold %C 20.76 scaffold %G 20.66 scaffold %T 28.33 scaffold %N 1.91 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 61168 Percentage of assembly in scaffolded contigs 43.3% Percentage of assembly in unscaffolded contigs 56.7% Average number of contigs per scaffold 1.0 Average length of break (>25 Ns) between contigs in scaffold 803 Number of contigs 1343341 Number of contigs in scaffolds 61642 Number of contigs not in scaffolds 1281699 Total size of contigs 1961803329 Longest contig 424740 Shortest contig 74 Number of contigs > 1K nt 134796 10.0% Number of contigs > 10K nt 57219 4.3% Number of contigs > 100K nt 625 0.0% Number of contigs > 1M nt 0 0.0% Number of contigs > 10M nt 0 0.0% Mean contig size 1460 Median contig size 95 N50 contig length 22094 L50 contig count 24175 NG50 contig length 35883 LG50 contig count 10459 N50 contig - NG50 contig length difference 13789 contig %A 28.89 contig %C 21.16 contig %G 21.07 contig %T 28.88 contig %N 0.00 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 61168 ---------------- Information for assembly 'bird_6C_scaffolds.fa.gz' ---------------- Assumed genome size (Mbp) 1200.00 Number of scaffolds 60117 Total size of scaffolds 1090671524 Total scaffold length as percentage of assumed genome size 90.9% Longest scaffold 51442002 Shortest scaffold 59 Number of scaffolds > 1K nt 3551 5.9% Number of scaffolds > 10K nt 589 1.0% Number of scaffolds > 100K nt 313 0.5% Number of scaffolds > 1M nt 167 0.3% Number of scaffolds > 10M nt 32 0.1% Mean scaffold size 18142 Median scaffold size 153 N50 scaffold length 9834474 L50 scaffold count 33 NG50 scaffold length 7539259 LG50 scaffold count 40 N50 scaffold - NG50 scaffold length difference 2295215 scaffold %A 28.15 scaffold %C 19.70 scaffold %G 19.72 scaffold %T 28.14 scaffold %N 4.30 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 98.7% Percentage of assembly in unscaffolded contigs 1.3% Average number of contigs per scaffold 2.1 Average length of break (>25 Ns) between contigs in scaffold 732 Number of contigs 124089 Number of contigs in scaffolds 68487 Number of contigs not in scaffolds 55602 Total size of contigs 1043814467 Longest contig 554547 Shortest contig 59 Number of contigs > 1K nt 51852 41.8% Number of contigs > 10K nt 26344 21.2% Number of contigs > 100K nt 1106 0.9% Number of contigs > 1M nt 0 0.0% Number of contigs > 10M nt 0 0.0% Mean contig size 8412 Median contig size 387 N50 contig length 39050 L50 contig count 7234 NG50 contig length 32067 LG50 contig count 9439 N50 contig - NG50 contig length difference 6983 contig %A 29.42 contig %C 20.58 contig %G 20.60 contig %T 29.40 contig %N 0.00 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 ---------------- Information for assembly 'bird_7C_scaffolds.fa.gz' ---------------- Assumed genome size (Mbp) 1200.00 Number of scaffolds 8062 Total size of scaffolds 1117368293 Total scaffold length as percentage of assumed genome size 93.1% Longest scaffold 51782236 Shortest scaffold 1786 Number of scaffolds > 1K nt 8062 100.0% Number of scaffolds > 10K nt 561 7.0% Number of scaffolds > 100K nt 316 3.9% Number of scaffolds > 1M nt 158 2.0% Number of scaffolds > 10M nt 26 0.3% Mean scaffold size 138597 Median scaffold size 3763 N50 scaffold length 11255263 L50 scaffold count 25 NG50 scaffold length 9041501 LG50 scaffold count 29 N50 scaffold - NG50 scaffold length difference 2213762 scaffold %A 27.90 scaffold %C 19.52 scaffold %G 19.61 scaffold %T 28.01 scaffold %N 4.97 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 97.4% Percentage of assembly in unscaffolded contigs 2.6% Average number of contigs per scaffold 4.7 Average length of break (>25 Ns) between contigs in scaffold 1876 Number of contigs 37670 Number of contigs in scaffolds 30601 Number of contigs not in scaffolds 7069 Total size of contigs 1061811053 Longest contig 671541 Shortest contig 490 Number of contigs > 1K nt 37300 99.0% Number of contigs > 10K nt 20090 53.3% Number of contigs > 100K nt 2326 6.2% Number of contigs > 1M nt 0 0.0% Number of contigs > 10M nt 0 0.0% Mean contig size 28187 Median contig size 11545 N50 contig length 67833 L50 contig count 4312 NG50 contig length 57469 LG50 contig count 5420 N50 contig - NG50 contig length difference 10364 contig %A 29.36 contig %C 20.54 contig %G 20.63 contig %T 29.47 contig %N 0.00 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 ---------------- Information for assembly 'bird_8C_scaffolds.fa.gz' ---------------- Assumed genome size (Mbp) 1200.00 Number of scaffolds 1542 Total size of scaffolds 11171392 Total scaffold length as percentage of assumed genome size 0.9% Longest scaffold 66393 Shortest scaffold 31 Number of scaffolds > 1K nt 1533 99.4% Number of scaffolds > 10K nt 81 5.3% Number of scaffolds > 100K nt 0 0.0% Number of scaffolds > 1M nt 0 0.0% Number of scaffolds > 10M nt 0 0.0% Mean scaffold size 7245 Median scaffold size 6500 N50 scaffold length 6500 L50 scaffold count 659 N50 scaffold - NG50 scaffold length difference 6500 scaffold %A 5.12 scaffold %C 4.40 scaffold %G 4.31 scaffold %T 5.05 scaffold %N 81.10 scaffold %non-ACGTN 0.02 Number of scaffold non-ACGTN nt 2329 Percentage of assembly in scaffolded contigs 93.2% Percentage of assembly in unscaffolded contigs 6.8% Average number of contigs per scaffold 2.0 Average length of break (>25 Ns) between contigs in scaffold 6035 Number of contigs 3043 Number of contigs in scaffolds 2962 Number of contigs not in scaffolds 81 Total size of contigs 2112354 Longest contig 51181 Shortest contig 22 Number of contigs > 1K nt 299 9.8% Number of contigs > 10K nt 44 1.4% Number of contigs > 100K nt 0 0.0% Number of contigs > 1M nt 0 0.0% Number of contigs > 10M nt 0 0.0% Mean contig size 694 Median contig size 101 N50 contig length 6717 L50 contig count 69 N50 contig - NG50 contig length difference 6717 contig %A 27.08 contig %C 23.29 contig %G 22.79 contig %T 26.68 contig %N 0.05 contig %non-ACGTN 0.11 Number of contig non-ACGTN nt 2329 ---------------- Information for assembly 'bird_9C_scaffolds.fa.gz' ---------------- Assumed genome size (Mbp) 1200.00 Number of scaffolds 54668 Total size of scaffolds 1219132003 Total scaffold length as percentage of assumed genome size 101.6% Longest scaffold 11564683 Shortest scaffold 119 Number of scaffolds > 1K nt 54513 99.7% Number of scaffolds > 10K nt 3277 6.0% Number of scaffolds > 100K nt 1020 1.9% Number of scaffolds > 1M nt 326 0.6% Number of scaffolds > 10M nt 5 0.0% Mean scaffold size 22301 Median scaffold size 1420 N50 scaffold length 1705751 L50 scaffold count 183 NG50 scaffold length 1758729 LG50 scaffold count 177 N50 scaffold - NG50 scaffold length difference 52978 scaffold %A 28.44 scaffold %C 20.35 scaffold %G 20.37 scaffold %T 28.46 scaffold %N 2.38 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 90.8% Percentage of assembly in unscaffolded contigs 9.2% Average number of contigs per scaffold 1.4 Average length of break (>25 Ns) between contigs in scaffold 1268 Number of contigs 77556 Number of contigs in scaffolds 25627 Number of contigs not in scaffolds 51929 Total size of contigs 1190105244 Longest contig 849044 Shortest contig 66 Number of contigs > 1K nt 76963 99.2% Number of contigs > 10K nt 15132 19.5% Number of contigs > 100K nt 3283 4.2% Number of contigs > 1M nt 0 0.0% Number of contigs > 10M nt 0 0.0% Mean contig size 15345 Median contig size 1673 N50 contig length 102885 L50 contig count 3166 NG50 contig length 101602 LG50 contig count 3214 N50 contig - NG50 contig length difference 1283 contig %A 29.13 contig %C 20.85 contig %G 20.87 contig %T 29.15 contig %N 0.00 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 ---------------- Information for assembly 'fish_10E_scaffolds.fa.gz' ---------------- Assumed genome size (Mbp) 1000.00 Number of scaffolds 1814638 Total size of scaffolds 1267700232 Total scaffold length as percentage of assumed genome size 126.8% Longest scaffold 14470 Shortest scaffold 47 Number of scaffolds > 1K nt 378911 20.9% Number of scaffolds > 10K nt 3 0.0% Number of scaffolds > 100K nt 0 0.0% Number of scaffolds > 1M nt 0 0.0% Number of scaffolds > 10M nt 0 0.0% Mean scaffold size 699 Median scaffold size 498 N50 scaffold length 974 L50 scaffold count 395968 NG50 scaffold length 1203 LG50 scaffold count 272085 N50 scaffold - NG50 scaffold length difference 229 scaffold %A 29.82 scaffold %C 20.21 scaffold %G 20.22 scaffold %T 29.75 scaffold %N 0.00 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 0.0% Percentage of assembly in unscaffolded contigs 100.0% Average number of contigs per scaffold 1.0 Average length of break (>25 Ns) between contigs in scaffold 0 Number of contigs 1814638 Number of contigs in scaffolds 0 Number of contigs not in scaffolds 1814638 Total size of contigs 1267700232 Longest contig 14470 Shortest contig 47 Number of contigs > 1K nt 378911 20.9% Number of contigs > 10K nt 3 0.0% Number of contigs > 100K nt 0 0.0% Number of contigs > 1M nt 0 0.0% Number of contigs > 10M nt 0 0.0% Mean contig size 699 Median contig size 498 N50 contig length 974 L50 contig count 395968 NG50 contig length 1203 LG50 contig count 272085 N50 contig - NG50 contig length difference 229 contig %A 29.82 contig %C 20.21 contig %G 20.22 contig %T 29.75 contig %N 0.00 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 ---------------- Information for assembly 'fish_11E_scaffolds.fa.gz' ---------------- Assumed genome size (Mbp) 1000.00 Number of scaffolds 250916 Total size of scaffolds 1098095360 Total scaffold length as percentage of assumed genome size 109.8% Longest scaffold 9691671 Shortest scaffold 100 Number of scaffolds > 1K nt 15050 6.0% Number of scaffolds > 10K nt 3398 1.4% Number of scaffolds > 100K nt 1101 0.4% Number of scaffolds > 1M nt 301 0.1% Number of scaffolds > 10M nt 0 0.0% Mean scaffold size 4376 Median scaffold size 130 N50 scaffold length 1326539 L50 scaffold count 219 NG50 scaffold length 1468157 LG50 scaffold count 184 N50 scaffold - NG50 scaffold length difference 141618 scaffold %A 22.24 scaffold %C 15.17 scaffold %G 15.17 scaffold %T 22.23 scaffold %N 25.20 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 95.7% Percentage of assembly in unscaffolded contigs 4.3% Average number of contigs per scaffold 1.8 Average length of break (>25 Ns) between contigs in scaffold 1345 Number of contigs 456565 Number of contigs in scaffolds 216466 Number of contigs not in scaffolds 240099 Total size of contigs 821406943 Longest contig 87527 Shortest contig 8 Number of contigs > 1K nt 128981 28.3% Number of contigs > 10K nt 20549 4.5% Number of contigs > 100K nt 0 0.0% Number of contigs > 1M nt 0 0.0% Number of contigs > 10M nt 0 0.0% Mean contig size 1799 Median contig size 229 N50 contig length 8152 L50 contig count 27928 NG50 contig length 6001 LG50 contig count 40685 N50 contig - NG50 contig length difference 2151 contig %A 29.73 contig %C 20.27 contig %G 20.28 contig %T 29.72 contig %N 0.00 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 ---------------- Information for assembly 'fish_12C_scaffolds.fa.gz' ---------------- Assumed genome size (Mbp) 1000.00 Number of scaffolds 3188 Total size of scaffolds 845089232 Total scaffold length as percentage of assumed genome size 84.5% Longest scaffold 25478728 Shortest scaffold 935 Number of scaffolds > 1K nt 3180 99.7% Number of scaffolds > 10K nt 785 24.6% Number of scaffolds > 100K nt 443 13.9% Number of scaffolds > 1M nt 208 6.5% Number of scaffolds > 10M nt 10 0.3% Mean scaffold size 265084 Median scaffold size 2399 N50 scaffold length 3709184 L50 scaffold count 57 NG50 scaffold length 2945418 LG50 scaffold count 81 N50 scaffold - NG50 scaffold length difference 763766 scaffold %A 25.27 scaffold %C 17.23 scaffold %G 17.23 scaffold %T 25.28 scaffold %N 14.90 scaffold %non-ACGTN 0.09 Number of scaffold non-ACGTN nt 720817 Percentage of assembly in scaffolded contigs 99.5% Percentage of assembly in unscaffolded contigs 0.5% Average number of contigs per scaffold 18.8 Average length of break (>25 Ns) between contigs in scaffold 2215 Number of contigs 60030 Number of contigs in scaffolds 58093 Number of contigs not in scaffolds 1937 Total size of contigs 719167737 Longest contig 278774 Shortest contig 40 Number of contigs > 1K nt 58778 97.9% Number of contigs > 10K nt 21161 35.3% Number of contigs > 100K nt 229 0.4% Number of contigs > 1M nt 0 0.0% Number of contigs > 10M nt 0 0.0% Mean contig size 11980 Median contig size 6011 N50 contig length 25190 L50 contig count 7978 NG50 contig length 14402 LG50 contig count 15352 N50 contig - NG50 contig length difference 10788 contig %A 29.70 contig %C 20.25 contig %G 20.25 contig %T 29.70 contig %N 0.00 contig %non-ACGTN 0.10 Number of contig non-ACGTN nt 720817 ---------------- Information for assembly 'fish_13C_scaffolds.fa.gz' ---------------- Assumed genome size (Mbp) 1000.00 Number of scaffolds 15892 Total size of scaffolds 825949698 Total scaffold length as percentage of assumed genome size 82.6% Longest scaffold 2055511 Shortest scaffold 883 Number of scaffolds > 1K nt 15724 98.9% Number of scaffolds > 10K nt 5665 35.6% Number of scaffolds > 100K nt 2230 14.0% Number of scaffolds > 1M nt 46 0.3% Number of scaffolds > 10M nt 0 0.0% Mean scaffold size 51973 Median scaffold size 2727 N50 scaffold length 303374 L50 scaffold count 779 NG50 scaffold length 229222 LG50 scaffold count 1111 N50 scaffold - NG50 scaffold length difference 74152 scaffold %A 18.82 scaffold %C 12.89 scaffold %G 12.89 scaffold %T 18.82 scaffold %N 36.58 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 98.2% Percentage of assembly in unscaffolded contigs 1.8% Average number of contigs per scaffold 12.4 Average length of break (>25 Ns) between contigs in scaffold 1664 Number of contigs 197453 Number of contigs in scaffolds 188723 Number of contigs not in scaffolds 8730 Total size of contigs 523805987 Longest contig 42428 Shortest contig 0 Number of contigs > 1K nt 193997 98.2% Number of contigs > 10K nt 2132 1.1% Number of contigs > 100K nt 0 0.0% Number of contigs > 1M nt 0 0.0% Number of contigs > 10M nt 0 0.0% Mean contig size 2653 Median contig size 2026 N50 contig length 3126 L50 contig count 51074 NG50 contig length 1180 LG50 contig count 175037 N50 contig - NG50 contig length difference 1946 contig %A 29.67 contig %C 20.32 contig %G 20.33 contig %T 29.67 contig %N 0.00 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 ---------------- Information for assembly 'fish_14E_scaffolds.fa.gz' ---------------- Assumed genome size (Mbp) 1000.00 Number of scaffolds 2791 Total size of scaffolds 844657792 Total scaffold length as percentage of assumed genome size 84.5% Longest scaffold 25479815 Shortest scaffold 935 Number of scaffolds > 1K nt 2787 99.9% Number of scaffolds > 10K nt 785 28.1% Number of scaffolds > 100K nt 443 15.9% Number of scaffolds > 1M nt 208 7.5% Number of scaffolds > 10M nt 10 0.4% Mean scaffold size 302636 Median scaffold size 3312 N50 scaffold length 3710017 L50 scaffold count 57 NG50 scaffold length 2946467 LG50 scaffold count 81 N50 scaffold - NG50 scaffold length difference 763550 scaffold %A 25.27 scaffold %C 17.23 scaffold %G 17.23 scaffold %T 25.27 scaffold %N 14.93 scaffold %non-ACGTN 0.09 Number of scaffold non-ACGTN nt 721024 Percentage of assembly in scaffolded contigs 99.6% Percentage of assembly in unscaffolded contigs 0.4% Average number of contigs per scaffold 21.6 Average length of break (>25 Ns) between contigs in scaffold 2195 Number of contigs 60197 Number of contigs in scaffolds 58661 Number of contigs not in scaffolds 1536 Total size of contigs 718608103 Longest contig 278774 Shortest contig 40 Number of contigs > 1K nt 58928 97.9% Number of contigs > 10K nt 21248 35.3% Number of contigs > 100K nt 223 0.4% Number of contigs > 1M nt 0 0.0% Number of contigs > 10M nt 0 0.0% Mean contig size 11938 Median contig size 6059 N50 contig length 24856 L50 contig count 8078 NG50 contig length 14238 LG50 contig count 15558 N50 contig - NG50 contig length difference 10618 contig %A 29.70 contig %C 20.25 contig %G 20.25 contig %T 29.70 contig %N 0.00 contig %non-ACGTN 0.10 Number of contig non-ACGTN nt 721024 ---------------- Information for assembly 'fish_15E_scaffolds.fa.gz' ---------------- Assumed genome size (Mbp) 1000.00 Number of scaffolds 218643 Total size of scaffolds 545734294 Total scaffold length as percentage of assumed genome size 54.6% Longest scaffold 42820 Shortest scaffold 1000 Number of scaffolds > 1K nt 218479 99.9% Number of scaffolds > 10K nt 1431 0.7% Number of scaffolds > 100K nt 0 0.0% Number of scaffolds > 1M nt 0 0.0% Number of scaffolds > 10M nt 0 0.0% Mean scaffold size 2496 Median scaffold size 1956 N50 scaffold length 2818 L50 scaffold count 59772 NG50 scaffold length 1301 LG50 scaffold count 178732 N50 scaffold - NG50 scaffold length difference 1517 scaffold %A 29.71 scaffold %C 20.26 scaffold %G 20.27 scaffold %T 29.75 scaffold %N 0.01 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 0.0% Percentage of assembly in unscaffolded contigs 100.0% Average number of contigs per scaffold 1.0 Average length of break (>25 Ns) between contigs in scaffold 0 Number of contigs 218643 Number of contigs in scaffolds 0 Number of contigs not in scaffolds 218643 Total size of contigs 545734294 Longest contig 42820 Shortest contig 1000 Number of contigs > 1K nt 218479 99.9% Number of contigs > 10K nt 1431 0.7% Number of contigs > 100K nt 0 0.0% Number of contigs > 1M nt 0 0.0% Number of contigs > 10M nt 0 0.0% Mean contig size 2496 Median contig size 1956 N50 contig length 2818 L50 contig count 59772 NG50 contig length 1301 LG50 contig count 178732 N50 contig - NG50 contig length difference 1517 contig %A 29.71 contig %C 20.26 contig %G 20.27 contig %T 29.75 contig %N 0.01 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 ---------------- Information for assembly 'fish_16E_scaffolds.fa.gz' ---------------- Assumed genome size (Mbp) 1000.00 Number of scaffolds 1771927 Total size of scaffolds 2456461390 Total scaffold length as percentage of assumed genome size 245.6% Longest scaffold 257230 Shortest scaffold 100 Number of scaffolds > 1K nt 151311 8.5% Number of scaffolds > 10K nt 61850 3.5% Number of scaffolds > 100K nt 645 0.0% Number of scaffolds > 1M nt 0 0.0% Number of scaffolds > 10M nt 0 0.0% Mean scaffold size 1386 Median scaffold size 128 N50 scaffold length 20694 L50 scaffold count 28259 NG50 scaffold length 49719 LG50 scaffold count 7070 N50 scaffold - NG50 scaffold length difference 29025 scaffold %A 10.10 scaffold %C 6.56 scaffold %G 6.57 scaffold %T 10.09 scaffold %N 66.69 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 85.2% Percentage of assembly in unscaffolded contigs 14.8% Average number of contigs per scaffold 1.2 Average length of break (>25 Ns) between contigs in scaffold 3712 Number of contigs 2212339 Number of contigs in scaffolds 575194 Number of contigs not in scaffolds 1637145 Total size of contigs 818340274 Longest contig 15078 Shortest contig 0 Number of contigs > 1K nt 172912 7.8% Number of contigs > 10K nt 15 0.0% Number of contigs > 100K nt 0 0.0% Number of contigs > 1M nt 0 0.0% Number of contigs > 10M nt 0 0.0% Mean contig size 370 Median contig size 174 N50 contig length 659 L50 contig count 327162 NG50 contig length 474 LG50 contig count 489859 N50 contig - NG50 contig length difference 185 contig %A 30.32 contig %C 19.68 contig %G 19.72 contig %T 30.28 contig %N 0.00 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 ---------------- Information for assembly 'fish_1C_scaffolds.fa.gz' ---------------- Assumed genome size (Mbp) 1000.00 Number of scaffolds 84294 Total size of scaffolds 885145373 Total scaffold length as percentage of assumed genome size 88.5% Longest scaffold 21930816 Shortest scaffold 39 Number of scaffolds > 1K nt 3783 4.5% Number of scaffolds > 10K nt 1195 1.4% Number of scaffolds > 100K nt 371 0.4% Number of scaffolds > 1M nt 178 0.2% Number of scaffolds > 10M nt 15 0.0% Mean scaffold size 10501 Median scaffold size 221 N50 scaffold length 4966190 L50 scaffold count 49 NG50 scaffold length 4373261 LG50 scaffold count 61 N50 scaffold - NG50 scaffold length difference 592929 scaffold %A 25.50 scaffold %C 17.46 scaffold %G 17.44 scaffold %T 25.47 scaffold %N 14.14 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 97.4% Percentage of assembly in unscaffolded contigs 2.6% Average number of contigs per scaffold 1.7 Average length of break (>25 Ns) between contigs in scaffold 1990 Number of contigs 147112 Number of contigs in scaffolds 65102 Number of contigs not in scaffolds 82010 Total size of contigs 760133580 Longest contig 300452 Shortest contig 1 Number of contigs > 1K nt 52169 35.5% Number of contigs > 10K nt 19274 13.1% Number of contigs > 100K nt 557 0.4% Number of contigs > 1M nt 0 0.0% Number of contigs > 10M nt 0 0.0% Mean contig size 5167 Median contig size 407 N50 contig length 31673 L50 contig count 6488 NG50 contig length 19381 LG50 contig count 11316 N50 contig - NG50 contig length difference 12292 contig %A 29.69 contig %C 20.33 contig %G 20.31 contig %T 29.66 contig %N 0.01 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 ---------------- Information for assembly 'fish_2E_scaffolds.fa.gz' ---------------- Assumed genome size (Mbp) 1000.00 Number of scaffolds 2998798 Total size of scaffolds 1502852872 Total scaffold length as percentage of assumed genome size 150.3% Longest scaffold 14443 Shortest scaffold 101 Number of scaffolds > 1K nt 286536 9.6% Number of scaffolds > 10K nt 2 0.0% Number of scaffolds > 100K nt 0 0.0% Number of scaffolds > 1M nt 0 0.0% Number of scaffolds > 10M nt 0 0.0% Mean scaffold size 501 Median scaffold size 371 N50 scaffold length 638 L50 scaffold count 721259 NG50 scaffold length 883 LG50 scaffold count 384664 N50 scaffold - NG50 scaffold length difference 245 scaffold %A 30.05 scaffold %C 19.98 scaffold %G 19.98 scaffold %T 30.00 scaffold %N 0.00 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 0.0% Percentage of assembly in unscaffolded contigs 100.0% Average number of contigs per scaffold 1.0 Average length of break (>25 Ns) between contigs in scaffold 0 Number of contigs 2998798 Number of contigs in scaffolds 0 Number of contigs not in scaffolds 2998798 Total size of contigs 1502852872 Longest contig 14443 Shortest contig 101 Number of contigs > 1K nt 286536 9.6% Number of contigs > 10K nt 2 0.0% Number of contigs > 100K nt 0 0.0% Number of contigs > 1M nt 0 0.0% Number of contigs > 10M nt 0 0.0% Mean contig size 501 Median contig size 371 N50 contig length 638 L50 contig count 721259 NG50 contig length 883 LG50 contig count 384664 N50 contig - NG50 contig length difference 245 contig %A 30.05 contig %C 19.98 contig %G 19.98 contig %T 30.00 contig %N 0.00 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 ---------------- Information for assembly 'fish_3C_scaffolds.fa.gz' ---------------- Assumed genome size (Mbp) 1000.00 Number of scaffolds 90811 Total size of scaffolds 812239698 Total scaffold length as percentage of assumed genome size 81.2% Longest scaffold 1760697 Shortest scaffold 500 Number of scaffolds > 1K nt 44894 49.4% Number of scaffolds > 10K nt 9103 10.0% Number of scaffolds > 100K nt 1974 2.2% Number of scaffolds > 1M nt 6 0.0% Number of scaffolds > 10M nt 0 0.0% Mean scaffold size 8944 Median scaffold size 992 N50 scaffold length 109887 L50 scaffold count 1746 NG50 scaffold length 73332 LG50 scaffold count 2793 N50 scaffold - NG50 scaffold length difference 36555 scaffold %A 24.64 scaffold %C 16.73 scaffold %G 16.73 scaffold %T 24.64 scaffold %N 17.27 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 88.9% Percentage of assembly in unscaffolded contigs 11.1% Average number of contigs per scaffold 1.9 Average length of break (>25 Ns) between contigs in scaffold 1790 Number of contigs 169137 Number of contigs in scaffolds 89899 Number of contigs not in scaffolds 79238 Total size of contigs 671996791 Longest contig 111299 Shortest contig 103 Number of contigs > 1K nt 122963 72.7% Number of contigs > 10K nt 16554 9.8% Number of contigs > 100K nt 2 0.0% Number of contigs > 1M nt 0 0.0% Number of contigs > 10M nt 0 0.0% Mean contig size 3973 Median contig size 1943 N50 contig length 7954 L50 contig count 23520 NG50 contig length 3755 LG50 contig count 53355 N50 contig - NG50 contig length difference 4199 contig %A 29.78 contig %C 20.22 contig %G 20.22 contig %T 29.79 contig %N 0.00 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 ---------------- Information for assembly 'fish_4C_scaffolds.fa.gz' ---------------- Assumed genome size (Mbp) 1000.00 Number of scaffolds 126254 Total size of scaffolds 795507070 Total scaffold length as percentage of assumed genome size 79.6% Longest scaffold 520692 Shortest scaffold 100 Number of scaffolds > 1K nt 67419 53.4% Number of scaffolds > 10K nt 14733 11.7% Number of scaffolds > 100K nt 1244 1.0% Number of scaffolds > 1M nt 0 0.0% Number of scaffolds > 10M nt 0 0.0% Mean scaffold size 6301 Median scaffold size 1125 N50 scaffold length 47200 L50 scaffold count 4420 NG50 scaffold length 30463 LG50 scaffold count 7108 N50 scaffold - NG50 scaffold length difference 16737 scaffold %A 27.64 scaffold %C 18.81 scaffold %G 18.81 scaffold %T 27.64 scaffold %N 7.10 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 80.8% Percentage of assembly in unscaffolded contigs 19.2% Average number of contigs per scaffold 1.4 Average length of break (>25 Ns) between contigs in scaffold 1026 Number of contigs 181260 Number of contigs in scaffolds 73478 Number of contigs not in scaffolds 107782 Total size of contigs 739043805 Longest contig 87518 Shortest contig 100 Number of contigs > 1K nt 119684 66.0% Number of contigs > 10K nt 20233 11.2% Number of contigs > 100K nt 0 0.0% Number of contigs > 1M nt 0 0.0% Number of contigs > 10M nt 0 0.0% Mean contig size 4077 Median contig size 1864 N50 contig length 9105 L50 contig count 23583 NG50 contig length 5860 LG50 contig count 41449 N50 contig - NG50 contig length difference 3245 contig %A 29.76 contig %C 20.25 contig %G 20.25 contig %T 29.75 contig %N 0.00 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 ---------------- Information for assembly 'fish_5C_scaffolds.fa.gz' ---------------- Assumed genome size (Mbp) 1000.00 Number of scaffolds 319367 Total size of scaffolds 1144279542 Total scaffold length as percentage of assumed genome size 114.4% Longest scaffold 9708937 Shortest scaffold 27 Number of scaffolds > 1K nt 79672 24.9% Number of scaffolds > 10K nt 2490 0.8% Number of scaffolds > 100K nt 781 0.2% Number of scaffolds > 1M nt 274 0.1% Number of scaffolds > 10M nt 0 0.0% Mean scaffold size 3583 Median scaffold size 386 N50 scaffold length 1241044 L50 scaffold count 220 NG50 scaffold length 1532535 LG50 scaffold count 169 N50 scaffold - NG50 scaffold length difference 291491 scaffold %A 24.02 scaffold %C 16.21 scaffold %G 16.22 scaffold %T 23.92 scaffold %N 19.62 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 83.6% Percentage of assembly in unscaffolded contigs 16.4% Average number of contigs per scaffold 1.2 Average length of break (>25 Ns) between contigs in scaffold 4116 Number of contigs 371994 Number of contigs in scaffolds 79461 Number of contigs not in scaffolds 292533 Total size of contigs 919780274 Longest contig 400522 Shortest contig 1 Number of contigs > 1K nt 99211 26.7% Number of contigs > 10K nt 16738 4.5% Number of contigs > 100K nt 948 0.3% Number of contigs > 1M nt 0 0.0% Number of contigs > 10M nt 0 0.0% Mean contig size 2473 Median contig size 426 N50 contig length 30868 L50 contig count 7067 NG50 contig length 25525 LG50 contig count 8497 N50 contig - NG50 contig length difference 5343 contig %A 29.89 contig %C 20.17 contig %G 20.18 contig %T 29.76 contig %N 0.00 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 ---------------- Information for assembly 'fish_6C_scaffolds.fa.gz' ---------------- Assumed genome size (Mbp) 1000.00 Number of scaffolds 2806 Total size of scaffolds 845883785 Total scaffold length as percentage of assumed genome size 84.6% Longest scaffold 20142773 Shortest scaffold 959 Number of scaffolds > 1K nt 2801 99.8% Number of scaffolds > 10K nt 791 28.2% Number of scaffolds > 100K nt 443 15.8% Number of scaffolds > 1M nt 200 7.1% Number of scaffolds > 10M nt 11 0.4% Mean scaffold size 301455 Median scaffold size 3268 N50 scaffold length 4014109 L50 scaffold count 57 NG50 scaffold length 3050429 LG50 scaffold count 78 N50 scaffold - NG50 scaffold length difference 963680 scaffold %A 25.24 scaffold %C 17.21 scaffold %G 17.21 scaffold %T 25.24 scaffold %N 15.02 scaffold %non-ACGTN 0.09 Number of scaffold non-ACGTN nt 746531 Percentage of assembly in scaffolded contigs 99.6% Percentage of assembly in unscaffolded contigs 0.4% Average number of contigs per scaffold 25.0 Average length of break (>25 Ns) between contigs in scaffold 1887 Number of contigs 70143 Number of contigs in scaffolds 68593 Number of contigs not in scaffolds 1550 Total size of contigs 718805019 Longest contig 213789 Shortest contig 40 Number of contigs > 1K nt 68503 97.7% Number of contigs > 10K nt 22612 32.2% Number of contigs > 100K nt 86 0.1% Number of contigs > 1M nt 0 0.0% Number of contigs > 10M nt 0 0.0% Mean contig size 10248 Median contig size 5446 N50 contig length 20130 L50 contig count 10140 NG50 contig length 11902 LG50 contig count 19236 N50 contig - NG50 contig length difference 8228 contig %A 29.70 contig %C 20.25 contig %G 20.25 contig %T 29.70 contig %N 0.00 contig %non-ACGTN 0.10 Number of contig non-ACGTN nt 746531 ---------------- Information for assembly 'fish_7C_scaffolds.fa.gz' ---------------- Assumed genome size (Mbp) 1000.00 Number of scaffolds 141476 Total size of scaffolds 875487613 Total scaffold length as percentage of assumed genome size 87.5% Longest scaffold 6408114 Shortest scaffold 185 Number of scaffolds > 1K nt 23110 16.3% Number of scaffolds > 10K nt 2949 2.1% Number of scaffolds > 100K nt 918 0.6% Number of scaffolds > 1M nt 230 0.2% Number of scaffolds > 10M nt 0 0.0% Mean scaffold size 6188 Median scaffold size 318 N50 scaffold length 1067894 L50 scaffold count 208 NG50 scaffold length 847430 LG50 scaffold count 273 N50 scaffold - NG50 scaffold length difference 220464 scaffold %A 23.96 scaffold %C 16.29 scaffold %G 16.31 scaffold %T 23.95 scaffold %N 19.48 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 231 Percentage of assembly in scaffolded contigs 92.1% Percentage of assembly in unscaffolded contigs 7.9% Average number of contigs per scaffold 2.0 Average length of break (>25 Ns) between contigs in scaffold 1207 Number of contigs 282744 Number of contigs in scaffolds 149937 Number of contigs not in scaffolds 132807 Total size of contigs 704910949 Longest contig 62602 Shortest contig 56 Number of contigs > 1K nt 141361 50.0% Number of contigs > 10K nt 13241 4.7% Number of contigs > 100K nt 0 0.0% Number of contigs > 1M nt 0 0.0% Number of contigs > 10M nt 0 0.0% Mean contig size 2493 Median contig size 1000 N50 contig length 5960 L50 contig count 33472 NG50 contig length 3333 LG50 contig count 66474 N50 contig - NG50 contig length difference 2627 contig %A 29.76 contig %C 20.24 contig %G 20.26 contig %T 29.74 contig %N 0.00 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 231 ---------------- Information for assembly 'fish_8C_scaffolds.fa.gz' ---------------- Assumed genome size (Mbp) 1000.00 Number of scaffolds 242819 Total size of scaffolds 838528583 Total scaffold length as percentage of assumed genome size 83.9% Longest scaffold 7462314 Shortest scaffold 57 Number of scaffolds > 1K nt 17641 7.3% Number of scaffolds > 10K nt 2602 1.1% Number of scaffolds > 100K nt 1066 0.4% Number of scaffolds > 1M nt 200 0.1% Number of scaffolds > 10M nt 0 0.0% Mean scaffold size 3453 Median scaffold size 193 N50 scaffold length 881815 L50 scaffold count 238 NG50 scaffold length 613236 LG50 scaffold count 347 N50 scaffold - NG50 scaffold length difference 268579 scaffold %A 24.34 scaffold %C 16.44 scaffold %G 16.42 scaffold %T 24.22 scaffold %N 18.57 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 91.1% Percentage of assembly in unscaffolded contigs 8.9% Average number of contigs per scaffold 1.5 Average length of break (>25 Ns) between contigs in scaffold 1169 Number of contigs 375935 Number of contigs in scaffolds 147219 Number of contigs not in scaffolds 228716 Total size of contigs 682812950 Longest contig 76409 Shortest contig 57 Number of contigs > 1K nt 124828 33.2% Number of contigs > 10K nt 14410 3.8% Number of contigs > 100K nt 0 0.0% Number of contigs > 1M nt 0 0.0% Number of contigs > 10M nt 0 0.0% Mean contig size 1816 Median contig size 364 N50 contig length 6587 L50 contig count 28383 NG50 contig length 3056 LG50 contig count 63220 N50 contig - NG50 contig length difference 3531 contig %A 29.89 contig %C 20.19 contig %G 20.17 contig %T 29.75 contig %N 0.00 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 ---------------- Information for assembly 'fish_9C_scaffolds.fa.gz' ---------------- Assumed genome size (Mbp) 1000.00 Number of scaffolds 895482 Total size of scaffolds 1385606557 Total scaffold length as percentage of assumed genome size 138.6% Longest scaffold 24847 Shortest scaffold 121 Number of scaffolds > 1K nt 486226 54.3% Number of scaffolds > 10K nt 1510 0.2% Number of scaffolds > 100K nt 0 0.0% Number of scaffolds > 1M nt 0 0.0% Number of scaffolds > 10M nt 0 0.0% Mean scaffold size 1547 Median scaffold size 1106 N50 scaffold length 2250 L50 scaffold count 186966 NG50 scaffold length 2954 LG50 scaffold count 111980 N50 scaffold - NG50 scaffold length difference 704 scaffold %A 29.91 scaffold %C 20.18 scaffold %G 20.22 scaffold %T 29.69 scaffold %N 0.00 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 0.0% Percentage of assembly in unscaffolded contigs 100.0% Average number of contigs per scaffold 1.0 Average length of break (>25 Ns) between contigs in scaffold 0 Number of contigs 895482 Number of contigs in scaffolds 0 Number of contigs not in scaffolds 895482 Total size of contigs 1385606557 Longest contig 24847 Shortest contig 121 Number of contigs > 1K nt 486226 54.3% Number of contigs > 10K nt 1510 0.2% Number of contigs > 100K nt 0 0.0% Number of contigs > 1M nt 0 0.0% Number of contigs > 10M nt 0 0.0% Mean contig size 1547 Median contig size 1106 N50 contig length 2250 L50 contig count 186966 NG50 contig length 2954 LG50 contig count 111980 N50 contig - NG50 contig length difference 704 contig %A 29.91 contig %C 20.18 contig %G 20.22 contig %T 29.69 contig %N 0.00 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 ---------------- Information for assembly 'snake_10C_scaffolds.fa.gz' ---------------- Assumed genome size (Mbp) 1600.00 Number of scaffolds 73335 Total size of scaffolds 1523758816 Total scaffold length as percentage of assumed genome size 95.2% Longest scaffold 3380167 Shortest scaffold 200 Number of scaffolds > 1K nt 21054 28.7% Number of scaffolds > 10K nt 5904 8.1% Number of scaffolds > 100K nt 2599 3.5% Number of scaffolds > 1M nt 332 0.5% Number of scaffolds > 10M nt 0 0.0% Mean scaffold size 20778 Median scaffold size 477 N50 scaffold length 690087 L50 scaffold count 665 NG50 scaffold length 647986 LG50 scaffold count 722 N50 scaffold - NG50 scaffold length difference 42101 scaffold %A 27.56 scaffold %C 18.56 scaffold %G 18.56 scaffold %T 27.56 scaffold %N 7.76 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 69523 Percentage of assembly in scaffolded contigs 96.0% Percentage of assembly in unscaffolded contigs 4.0% Average number of contigs per scaffold 2.4 Average length of break (>25 Ns) between contigs in scaffold 1141 Number of contigs 176512 Number of contigs in scaffolds 111740 Number of contigs not in scaffolds 64772 Total size of contigs 1405963068 Longest contig 197247 Shortest contig 64 Number of contigs > 1K nt 109957 62.3% Number of contigs > 10K nt 46621 26.4% Number of contigs > 100K nt 115 0.1% Number of contigs > 1M nt 0 0.0% Number of contigs > 10M nt 0 0.0% Mean contig size 7965 Median contig size 2525 N50 contig length 21557 L50 contig count 19513 NG50 contig length 18533 LG50 contig count 24369 N50 contig - NG50 contig length difference 3024 contig %A 29.87 contig %C 20.12 contig %G 20.11 contig %T 29.87 contig %N 0.03 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 69523 ---------------- Information for assembly 'snake_11C_scaffolds.fa.gz' ---------------- Assumed genome size (Mbp) 1600.00 Number of scaffolds 56400 Total size of scaffolds 1616579346 Total scaffold length as percentage of assumed genome size 101.0% Longest scaffold 9404725 Shortest scaffold 96 Number of scaffolds > 1K nt 3615 6.4% Number of scaffolds > 10K nt 2233 4.0% Number of scaffolds > 100K nt 1500 2.7% Number of scaffolds > 1M nt 520 0.9% Number of scaffolds > 10M nt 0 0.0% Mean scaffold size 28663 Median scaffold size 125 N50 scaffold length 1772383 L50 scaffold count 260 NG50 scaffold length 1805615 LG50 scaffold count 256 N50 scaffold - NG50 scaffold length difference 33232 scaffold %A 27.92 scaffold %C 18.82 scaffold %G 18.81 scaffold %T 27.88 scaffold %N 6.57 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 99.3% Percentage of assembly in unscaffolded contigs 0.7% Average number of contigs per scaffold 3.3 Average length of break (>25 Ns) between contigs in scaffold 801 Number of contigs 188914 Number of contigs in scaffolds 136811 Number of contigs not in scaffolds 52103 Total size of contigs 1510431181 Longest contig 153304 Shortest contig 8 Number of contigs > 1K nt 122401 64.8% Number of contigs > 10K nt 53504 28.3% Number of contigs > 100K nt 36 0.0% Number of contigs > 1M nt 0 0.0% Number of contigs > 10M nt 0 0.0% Mean contig size 7995 Median contig size 4592 N50 contig length 17869 L50 contig count 25713 NG50 contig length 16821 LG50 contig count 28296 N50 contig - NG50 contig length difference 1048 contig %A 29.88 contig %C 20.15 contig %G 20.13 contig %T 29.84 contig %N 0.00 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 ---------------- Information for assembly 'snake_12C_scaffolds.fa.gz' ---------------- Assumed genome size (Mbp) 1600.00 Number of scaffolds 58489 Total size of scaffolds 312679683 Total scaffold length as percentage of assumed genome size 19.5% Longest scaffold 42551 Shortest scaffold 150 Number of scaffolds > 1K nt 56190 96.1% Number of scaffolds > 10K nt 5273 9.0% Number of scaffolds > 100K nt 0 0.0% Number of scaffolds > 1M nt 0 0.0% Number of scaffolds > 10M nt 0 0.0% Mean scaffold size 5346 Median scaffold size 4640 N50 scaffold length 6608 L50 scaffold count 15904 N50 scaffold - NG50 scaffold length difference 6608 scaffold %A 29.56 scaffold %C 20.42 scaffold %G 20.44 scaffold %T 29.58 scaffold %N 0.00 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 0.0% Percentage of assembly in unscaffolded contigs 100.0% Average number of contigs per scaffold 1.0 Average length of break (>25 Ns) between contigs in scaffold 0 Number of contigs 58489 Number of contigs in scaffolds 0 Number of contigs not in scaffolds 58489 Total size of contigs 312679683 Longest contig 42551 Shortest contig 150 Number of contigs > 1K nt 56190 96.1% Number of contigs > 10K nt 5273 9.0% Number of contigs > 100K nt 0 0.0% Number of contigs > 1M nt 0 0.0% Number of contigs > 10M nt 0 0.0% Mean contig size 5346 Median contig size 4640 N50 contig length 6608 L50 contig count 15904 N50 contig - NG50 contig length difference 6608 contig %A 29.56 contig %C 20.42 contig %G 20.44 contig %T 29.58 contig %N 0.00 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 ---------------- Information for assembly 'snake_1C_scaffolds.fa.gz' ---------------- Assumed genome size (Mbp) 1600.00 Number of scaffolds 80257 Total size of scaffolds 1457305051 Total scaffold length as percentage of assumed genome size 91.1% Longest scaffold 7189042 Shortest scaffold 60 Number of scaffolds > 1K nt 2672 3.3% Number of scaffolds > 10K nt 1889 2.4% Number of scaffolds > 100K nt 1465 1.8% Number of scaffolds > 1M nt 507 0.6% Number of scaffolds > 10M nt 0 0.0% Mean scaffold size 18158 Median scaffold size 253 N50 scaffold length 1525507 L50 scaffold count 298 NG50 scaffold length 1403225 LG50 scaffold count 347 N50 scaffold - NG50 scaffold length difference 122282 scaffold %A 27.64 scaffold %C 18.56 scaffold %G 18.57 scaffold %T 27.65 scaffold %N 7.58 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 98.4% Percentage of assembly in unscaffolded contigs 1.6% Average number of contigs per scaffold 2.9 Average length of break (>25 Ns) between contigs in scaffold 719 Number of contigs 233323 Number of contigs in scaffolds 155259 Number of contigs not in scaffolds 78064 Total size of contigs 1347127817 Longest contig 172797 Shortest contig 60 Number of contigs > 1K nt 127750 54.8% Number of contigs > 10K nt 44123 18.9% Number of contigs > 100K nt 44 0.0% Number of contigs > 1M nt 0 0.0% Number of contigs > 10M nt 0 0.0% Mean contig size 5774 Median contig size 1409 N50 contig length 17553 L50 contig count 22547 NG50 contig length 14038 LG50 contig count 30596 N50 contig - NG50 contig length difference 3515 contig %A 29.90 contig %C 20.08 contig %G 20.09 contig %T 29.91 contig %N 0.03 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 ---------------- Information for assembly 'snake_2C_scaffolds.fa.gz' ---------------- Assumed genome size (Mbp) 1600.00 Number of scaffolds 142691 Total size of scaffolds 1544787395 Total scaffold length as percentage of assumed genome size 96.5% Longest scaffold 1147836 Shortest scaffold 100 Number of scaffolds > 1K nt 40016 28.0% Number of scaffolds > 10K nt 17013 11.9% Number of scaffolds > 100K nt 4960 3.5% Number of scaffolds > 1M nt 1 0.0% Number of scaffolds > 10M nt 0 0.0% Mean scaffold size 10826 Median scaffold size 214 N50 scaffold length 132391 L50 scaffold count 3441 NG50 scaffold length 127253 LG50 scaffold count 3654 N50 scaffold - NG50 scaffold length difference 5138 scaffold %A 27.29 scaffold %C 18.65 scaffold %G 18.66 scaffold %T 27.29 scaffold %N 8.10 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 94.0% Percentage of assembly in unscaffolded contigs 6.0% Average number of contigs per scaffold 1.6 Average length of break (>25 Ns) between contigs in scaffold 1411 Number of contigs 231377 Number of contigs in scaffolds 108495 Number of contigs not in scaffolds 122882 Total size of contigs 1419599207 Longest contig 145383 Shortest contig 100 Number of contigs > 1K nt 125068 54.1% Number of contigs > 10K nt 49439 21.4% Number of contigs > 100K nt 35 0.0% Number of contigs > 1M nt 0 0.0% Number of contigs > 10M nt 0 0.0% Mean contig size 6135 Median contig size 1496 N50 contig length 18313 L50 contig count 23620 NG50 contig length 16009 LG50 contig count 28885 N50 contig - NG50 contig length difference 2304 contig %A 29.70 contig %C 20.30 contig %G 20.30 contig %T 29.70 contig %N 0.00 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 ---------------- Information for assembly 'snake_3C_scaffolds.fa.gz' ---------------- Assumed genome size (Mbp) 1600.00 Number of scaffolds 115349 Total size of scaffolds 1508014510 Total scaffold length as percentage of assumed genome size 94.3% Longest scaffold 405663 Shortest scaffold 149 Number of scaffolds > 1K nt 47406 41.1% Number of scaffolds > 10K nt 30845 26.7% Number of scaffolds > 100K nt 2080 1.8% Number of scaffolds > 1M nt 0 0.0% Number of scaffolds > 10M nt 0 0.0% Mean scaffold size 13073 Median scaffold size 734 N50 scaffold length 56493 L50 scaffold count 8614 NG50 scaffold length 53529 LG50 scaffold count 9450 N50 scaffold - NG50 scaffold length difference 2964 scaffold %A 26.50 scaffold %C 17.73 scaffold %G 17.73 scaffold %T 26.50 scaffold %N 11.55 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 94.8% Percentage of assembly in unscaffolded contigs 5.2% Average number of contigs per scaffold 2.3 Average length of break (>25 Ns) between contigs in scaffold 1109 Number of contigs 269686 Number of contigs in scaffolds 193564 Number of contigs not in scaffolds 76122 Total size of contigs 1336834090 Longest contig 120393 Shortest contig 52 Number of contigs > 1K nt 158027 58.6% Number of contigs > 10K nt 43432 16.1% Number of contigs > 100K nt 7 0.0% Number of contigs > 1M nt 0 0.0% Number of contigs > 10M nt 0 0.0% Mean contig size 4957 Median contig size 1641 N50 contig length 13812 L50 contig count 28946 NG50 contig length 10833 LG50 contig count 39703 N50 contig - NG50 contig length difference 2979 contig %A 29.89 contig %C 20.00 contig %G 20.00 contig %T 29.89 contig %N 0.22 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 ---------------- Information for assembly 'snake_4C_scaffolds.fa.gz' ---------------- Assumed genome size (Mbp) 1600.00 Number of scaffolds 248607 Total size of scaffolds 1395228853 Total scaffold length as percentage of assumed genome size 87.2% Longest scaffold 313720 Shortest scaffold 200 Number of scaffolds > 1K nt 116188 46.7% Number of scaffolds > 10K nt 45783 18.4% Number of scaffolds > 100K nt 125 0.1% Number of scaffolds > 1M nt 0 0.0% Number of scaffolds > 10M nt 0 0.0% Mean scaffold size 5612 Median scaffold size 846 N50 scaffold length 19904 L50 scaffold count 20705 NG50 scaffold length 16883 LG50 scaffold count 26292 N50 scaffold - NG50 scaffold length difference 3021 scaffold %A 29.21 scaffold %C 19.62 scaffold %G 19.61 scaffold %T 29.22 scaffold %N 2.34 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 81.1% Percentage of assembly in unscaffolded contigs 18.9% Average number of contigs per scaffold 1.8 Average length of break (>25 Ns) between contigs in scaffold 140 Number of contigs 447081 Number of contigs in scaffolds 290727 Number of contigs not in scaffolds 156354 Total size of contigs 1367394181 Longest contig 136983 Shortest contig 10 Number of contigs > 1K nt 221959 49.6% Number of contigs > 10K nt 35865 8.0% Number of contigs > 100K nt 4 0.0% Number of contigs > 1M nt 0 0.0% Number of contigs > 10M nt 0 0.0% Mean contig size 3058 Median contig size 979 N50 contig length 8360 L50 contig count 48396 NG50 contig length 6872 LG50 contig count 63740 N50 contig - NG50 contig length difference 1488 contig %A 29.81 contig %C 20.02 contig %G 20.00 contig %T 29.81 contig %N 0.36 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 ---------------- Information for assembly 'snake_5C_scaffolds.fa.gz' ---------------- Assumed genome size (Mbp) 1600.00 Number of scaffolds 108639 Total size of scaffolds 1537944246 Total scaffold length as percentage of assumed genome size 96.1% Longest scaffold 17562670 Shortest scaffold 300 Number of scaffolds > 1K nt 27451 25.3% Number of scaffolds > 10K nt 1402 1.3% Number of scaffolds > 100K nt 651 0.6% Number of scaffolds > 1M nt 359 0.3% Number of scaffolds > 10M nt 18 0.0% Mean scaffold size 14156 Median scaffold size 626 N50 scaffold length 4066190 L50 scaffold count 109 NG50 scaffold length 3846246 LG50 scaffold count 116 N50 scaffold - NG50 scaffold length difference 219944 scaffold %A 29.10 scaffold %C 19.70 scaffold %G 19.69 scaffold %T 29.08 scaffold %N 2.42 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 94.6% Percentage of assembly in unscaffolded contigs 5.4% Average number of contigs per scaffold 1.4 Average length of break (>25 Ns) between contigs in scaffold 795 Number of contigs 155430 Number of contigs in scaffolds 50355 Number of contigs not in scaffolds 105075 Total size of contigs 1500663571 Longest contig 523686 Shortest contig 3 Number of contigs > 1K nt 64549 41.5% Number of contigs > 10K nt 24052 15.5% Number of contigs > 100K nt 3573 2.3% Number of contigs > 1M nt 0 0.0% Number of contigs > 10M nt 0 0.0% Mean contig size 9655 Median contig size 797 N50 contig length 73165 L50 contig count 5974 NG50 contig length 67973 LG50 contig count 6680 N50 contig - NG50 contig length difference 5192 contig %A 29.83 contig %C 20.19 contig %G 20.18 contig %T 29.80 contig %N 0.00 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 ---------------- Information for assembly 'snake_6C_scaffolds.fa.gz' ---------------- Assumed genome size (Mbp) 1600.00 Number of scaffolds 54424 Total size of scaffolds 1435642091 Total scaffold length as percentage of assumed genome size 89.7% Longest scaffold 6640199 Shortest scaffold 82 Number of scaffolds > 1K nt 7078 13.0% Number of scaffolds > 10K nt 2621 4.8% Number of scaffolds > 100K nt 1699 3.1% Number of scaffolds > 1M nt 442 0.8% Number of scaffolds > 10M nt 0 0.0% Mean scaffold size 26379 Median scaffold size 232 N50 scaffold length 1237725 L50 scaffold count 332 NG50 scaffold length 1058023 LG50 scaffold count 405 N50 scaffold - NG50 scaffold length difference 179702 scaffold %A 28.85 scaffold %C 19.40 scaffold %G 19.41 scaffold %T 28.77 scaffold %N 3.56 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 98.6% Percentage of assembly in unscaffolded contigs 1.4% Average number of contigs per scaffold 2.4 Average length of break (>25 Ns) between contigs in scaffold 679 Number of contigs 129792 Number of contigs in scaffolds 82133 Number of contigs not in scaffolds 47659 Total size of contigs 1384464529 Longest contig 388005 Shortest contig 82 Number of contigs > 1K nt 69059 53.2% Number of contigs > 10K nt 38207 29.4% Number of contigs > 100K nt 918 0.7% Number of contigs > 1M nt 0 0.0% Number of contigs > 10M nt 0 0.0% Mean contig size 10667 Median contig size 1475 N50 contig length 35624 L50 contig count 11423 NG50 contig length 29995 LG50 contig count 14720 N50 contig - NG50 contig length difference 5629 contig %A 29.91 contig %C 20.12 contig %G 20.13 contig %T 29.84 contig %N 0.00 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 ---------------- Information for assembly 'snake_7C_scaffolds.fa.gz' ---------------- Assumed genome size (Mbp) 1600.00 Number of scaffolds 19927 Total size of scaffolds 1442930293 Total scaffold length as percentage of assumed genome size 90.2% Longest scaffold 22376278 Shortest scaffold 500 Number of scaffolds > 1K nt 4735 23.8% Number of scaffolds > 10K nt 1234 6.2% Number of scaffolds > 100K nt 662 3.3% Number of scaffolds > 1M nt 330 1.7% Number of scaffolds > 10M nt 18 0.1% Mean scaffold size 72411 Median scaffold size 711 N50 scaffold length 4505203 L50 scaffold count 90 NG50 scaffold length 3803459 LG50 scaffold count 109 N50 scaffold - NG50 scaffold length difference 701744 scaffold %A 28.72 scaffold %C 19.36 scaffold %G 19.35 scaffold %T 28.72 scaffold %N 3.86 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 99.0% Percentage of assembly in unscaffolded contigs 1.0% Average number of contigs per scaffold 5.6 Average length of break (>25 Ns) between contigs in scaffold 611 Number of contigs 111002 Number of contigs in scaffolds 94237 Number of contigs not in scaffolds 16765 Total size of contigs 1387241914 Longest contig 265251 Shortest contig 84 Number of contigs > 1K nt 83686 75.4% Number of contigs > 10K nt 42084 37.9% Number of contigs > 100K nt 436 0.4% Number of contigs > 1M nt 0 0.0% Number of contigs > 10M nt 0 0.0% Mean contig size 12497 Median contig size 5667 N50 contig length 29326 L50 contig count 14156 NG50 contig length 24787 LG50 contig count 18099 N50 contig - NG50 contig length difference 4539 contig %A 29.87 contig %C 20.13 contig %G 20.13 contig %T 29.87 contig %N 0.00 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 ---------------- Information for assembly 'snake_8C_scaffolds.fa.gz' ---------------- Assumed genome size (Mbp) 1600.00 Number of scaffolds 303359 Total size of scaffolds 2024710808 Total scaffold length as percentage of assumed genome size 126.5% Longest scaffold 9614433 Shortest scaffold 50 Number of scaffolds > 1K nt 95928 31.6% Number of scaffolds > 10K nt 23038 7.6% Number of scaffolds > 100K nt 1367 0.5% Number of scaffolds > 1M nt 507 0.2% Number of scaffolds > 10M nt 0 0.0% Mean scaffold size 6674 Median scaffold size 585 N50 scaffold length 1149010 L50 scaffold count 452 NG50 scaffold length 1615595 LG50 scaffold count 297 N50 scaffold - NG50 scaffold length difference 466585 scaffold %A 25.81 scaffold %C 17.53 scaffold %G 17.54 scaffold %T 25.74 scaffold %N 13.38 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 89.4% Percentage of assembly in unscaffolded contigs 10.6% Average number of contigs per scaffold 1.2 Average length of break (>25 Ns) between contigs in scaffold 3847 Number of contigs 373780 Number of contigs in scaffolds 101544 Number of contigs not in scaffolds 272236 Total size of contigs 1753784632 Longest contig 578805 Shortest contig 1 Number of contigs > 1K nt 143655 38.4% Number of contigs > 10K nt 23752 6.4% Number of contigs > 100K nt 3780 1.0% Number of contigs > 1M nt 0 0.0% Number of contigs > 10M nt 0 0.0% Mean contig size 4692 Median contig size 726 N50 contig length 65989 L50 contig count 7038 NG50 contig length 75015 LG50 contig count 5945 N50 contig - NG50 contig length difference 9026 contig %A 29.80 contig %C 20.23 contig %G 20.25 contig %T 29.72 contig %N 0.00 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 ---------------- Information for assembly 'snake_9C_scaffolds.fa.gz' ---------------- Assumed genome size (Mbp) 1600.00 Number of scaffolds 103933 Total size of scaffolds 1531420384 Total scaffold length as percentage of assumed genome size 95.7% Longest scaffold 2973150 Shortest scaffold 150 Number of scaffolds > 1K nt 19029 18.3% Number of scaffolds > 10K nt 6704 6.5% Number of scaffolds > 100K nt 3338 3.2% Number of scaffolds > 1M nt 196 0.2% Number of scaffolds > 10M nt 0 0.0% Mean scaffold size 14735 Median scaffold size 250 N50 scaffold length 468862 L50 scaffold count 960 NG50 scaffold length 448896 LG50 scaffold count 1034 N50 scaffold - NG50 scaffold length difference 19966 scaffold %A 28.82 scaffold %C 19.51 scaffold %G 19.51 scaffold %T 28.81 scaffold %N 3.34 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 11553 Percentage of assembly in scaffolded contigs 94.4% Percentage of assembly in unscaffolded contigs 5.6% Average number of contigs per scaffold 1.7 Average length of break (>25 Ns) between contigs in scaffold 668 Number of contigs 180487 Number of contigs in scaffolds 83062 Number of contigs not in scaffolds 97425 Total size of contigs 1480224179 Longest contig 221195 Shortest contig 80 Number of contigs > 1K nt 91344 50.6% Number of contigs > 10K nt 45625 25.3% Number of contigs > 100K nt 348 0.2% Number of contigs > 1M nt 0 0.0% Number of contigs > 10M nt 0 0.0% Mean contig size 8201 Median contig size 1052 N50 contig length 27894 L50 contig count 15951 NG50 contig length 25646 LG50 contig count 18189 N50 contig - NG50 contig length difference 2248 contig %A 29.82 contig %C 20.19 contig %G 20.18 contig %T 29.81 contig %N 0.00 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 11553