BMCDB Graduate Student
Daniël is a fourth year PhD student from the Biochemical, Molecular, Cellular and Developmental Biology (BMCDB) Graduate Group and he is a shared student with Simon Chan. DaniĆ«l is also a member of the Designated Emphasis in Biotechnology, and was a recipient of the NIH training grant in Biomolecular Technology.
Daniël joined the lab in Spring of 2009. His research project is focused on the evolution of the centromere tandem repeat sequences in hundreds eurkaryotes (plants, animals, fungi, protists and others) using bioinformatics. DNA sequences used to study these repeats come from different sequencing platforms, including Sanger, Illumina, 454, and PacBio.
Daniël received his BSc and MSc from Leiden University in the Netherlands. For his MSc he worked in Dr. Lipsky's lab at the NIH, studying the B lymphocyte immunoglobulin heavy chain repertoire. For his MSc thesis, Daniël worked in Prof. Dr. de Kloet's lab at the LACDR / Leiden University identifying SNPs in the mineralocorticoid receptor promoter of different inbred mouse strains. Following his MSc he moved to San Francisco where Daniël joined Dr. Pearce's lab at UCSF, working on understanding the signaling cascade regulation that regulate sodium reabsorption in kidney epithelium cells upon aldosterone treatment.
Jan 28, 2013: A Haldane's Sieve Blog Post by Keith Bradnam that discusses the Assemblathon 2 pre-print
Nov 12, 2012: a feature on Danielle Lemay by the Calfifornia Dairy Research Foundation
Mar 23, 2011: A Nature news article about genome assembly, with an interview of Ian Korf.
Our free 175-page primer that teaches the basics of Unix & Perl

Our book that greatly expands on our free primer.
Comprehensive online toolkit for sequence analysis and visualisation
Where we work
Part of the Genome Center
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Contact information for specific members of our lab can be found on their personal pages.