Processing A1_scaffolds.fa.gz <-- Information for assembly 'A1_scaffolds.fa.gz' --> Number of scaffolds 6229 Total size of scaffolds 133356337 Total scaffold length as percentage of known genome size 118.5% Longest scaffold 769386 Shortest scaffold 450 Number of scaffolds > 500 nt 6212 99.7% Number of scaffolds > 1K nt 5924 95.1% Number of scaffolds > 10K nt 3147 50.5% Number of scaffolds > 100K nt 175 2.8% Number of scaffolds > 1M nt 0 0.0% Mean scaffold size 21409 Median scaffold size 10170 N50 scaffold length 48089 L50 scaffold count 769 NG50 scaffold length 57802 LG50 scaffold count 570 N50 scaffold - NG50 scaffold length difference 9713 scaffold %A 29.57 scaffold %C 20.26 scaffold %G 20.28 scaffold %T 29.63 scaffold %N 0.26 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 65.5% Percentage of assembly in unscaffolded contigs 34.5% Average number of contigs per scaffold 1.6 Average length of break (>25 Ns) between contigs in scaffold 56 Number of contigs 9741 Number of contigs in scaffolds 5464 Number of contigs not in scaffolds 4277 Total size of contigs 133005137 Longest contig 494128 Shortest contig 450 Number of contigs > 500 nt 9721 99.8% Number of contigs > 1K nt 9121 93.6% Number of contigs > 10K nt 4217 43.3% Number of contigs > 100K nt 40 0.4% Number of contigs > 1M nt 0 0.0% Mean contig size 13654 Median contig size 8008 N50 contig length 25383 L50 contig count 1511 NG50 contig length 29971 LG50 contig count 1139 N50 contig - NG50 contig length difference 4588 contig %A 29.65 contig %C 20.31 contig %G 20.33 contig %T 29.71 contig %N 0.00 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 Processing B1_scaffolds.fa.gz <-- Information for assembly 'B1_scaffolds.fa.gz' --> Number of scaffolds 1449 Total size of scaffolds 117920931 Total scaffold length as percentage of known genome size 104.8% Longest scaffold 2032281 Shortest scaffold 201 Number of scaffolds > 500 nt 1228 84.7% Number of scaffolds > 1K nt 711 49.1% Number of scaffolds > 10K nt 375 25.9% Number of scaffolds > 100K nt 308 21.3% Number of scaffolds > 1M nt 8 0.6% Mean scaffold size 81381 Median scaffold size 980 N50 scaffold length 466811 L50 scaffold count 81 NG50 scaffold length 502551 LG50 scaffold count 75 N50 scaffold - NG50 scaffold length difference 35740 scaffold %A 29.70 scaffold %C 20.20 scaffold %G 20.21 scaffold %T 29.64 scaffold %N 0.26 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 97.4% Percentage of assembly in unscaffolded contigs 2.6% Average number of contigs per scaffold 3.1 Average length of break (>25 Ns) between contigs in scaffold 210 Number of contigs 4502 Number of contigs in scaffolds 3398 Number of contigs not in scaffolds 1104 Total size of contigs 117615631 Longest contig 347708 Shortest contig 201 Number of contigs > 500 nt 4281 95.1% Number of contigs > 1K nt 3764 83.6% Number of contigs > 10K nt 2270 50.4% Number of contigs > 100K nt 240 5.3% Number of contigs > 1M nt 0 0.0% Mean contig size 26125 Median contig size 10493 N50 contig length 66967 L50 contig count 548 NG50 contig length 70244 LG50 contig count 511 N50 contig - NG50 contig length difference 3277 contig %A 29.77 contig %C 20.25 contig %G 20.26 contig %T 29.72 contig %N 0.00 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 Processing B2_scaffolds.fa.gz <-- Information for assembly 'B2_scaffolds.fa.gz' --> Number of scaffolds 2048 Total size of scaffolds 119840251 Total scaffold length as percentage of known genome size 106.5% Longest scaffold 1922525 Shortest scaffold 200 Number of scaffolds > 500 nt 1261 61.6% Number of scaffolds > 1K nt 823 40.2% Number of scaffolds > 10K nt 440 21.5% Number of scaffolds > 100K nt 314 15.3% Number of scaffolds > 1M nt 10 0.5% Mean scaffold size 58516 Median scaffold size 731 N50 scaffold length 436591 L50 scaffold count 84 NG50 scaffold length 469540 LG50 scaffold count 76 N50 scaffold - NG50 scaffold length difference 32949 scaffold %A 29.47 scaffold %C 20.03 scaffold %G 20.02 scaffold %T 29.43 scaffold %N 1.05 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 86.6% Percentage of assembly in unscaffolded contigs 13.4% Average number of contigs per scaffold 1.5 Average length of break (>25 Ns) between contigs in scaffold 613 Number of contigs 3040 Number of contigs in scaffolds 1308 Number of contigs not in scaffolds 1732 Total size of contigs 118583921 Longest contig 1110065 Shortest contig 15 Number of contigs > 500 nt 2144 70.5% Number of contigs > 1K nt 1665 54.8% Number of contigs > 10K nt 1124 37.0% Number of contigs > 100K nt 406 13.4% Number of contigs > 1M nt 1 0.0% Mean contig size 39008 Median contig size 1456 N50 contig length 153374 L50 contig count 232 NG50 contig length 160054 LG50 contig count 213 N50 contig - NG50 contig length difference 6680 contig %A 29.78 contig %C 20.24 contig %G 20.23 contig %T 29.74 contig %N 0.00 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 Processing C1_scaffolds.fa.gz <-- Information for assembly 'C1_scaffolds.fa.gz' --> Number of scaffolds 5249 Total size of scaffolds 114193167 Total scaffold length as percentage of known genome size 101.5% Longest scaffold 2660971 Shortest scaffold 105 Number of scaffolds > 500 nt 871 16.6% Number of scaffolds > 1K nt 278 5.3% Number of scaffolds > 10K nt 198 3.8% Number of scaffolds > 100K nt 171 3.3% Number of scaffolds > 1M nt 36 0.7% Mean scaffold size 21755 Median scaffold size 172 N50 scaffold length 958921 L50 scaffold count 41 NG50 scaffold length 959728 LG50 scaffold count 40 N50 scaffold - NG50 scaffold length difference 807 scaffold %A 29.14 scaffold %C 19.48 scaffold %G 19.46 scaffold %T 29.13 scaffold %N 2.79 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 98.8% Percentage of assembly in unscaffolded contigs 1.2% Average number of contigs per scaffold 3.9 Average length of break (>25 Ns) between contigs in scaffold 607 Number of contigs 20229 Number of contigs in scaffolds 15186 Number of contigs not in scaffolds 5043 Total size of contigs 111027307 Longest contig 70936 Shortest contig 105 Number of contigs > 500 nt 15679 77.5% Number of contigs > 1K nt 14338 70.9% Number of contigs > 10K nt 3598 17.8% Number of contigs > 100K nt 0 0.0% Number of contigs > 1M nt 0 0.0% Mean contig size 5489 Median contig size 3318 N50 contig length 10819 L50 contig count 3169 NG50 contig length 10700 LG50 contig count 3237 N50 contig - NG50 contig length difference 119 contig %A 29.97 contig %C 20.03 contig %G 20.01 contig %T 29.96 contig %N 0.02 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 Processing C2_scaffolds.fa.gz <-- Information for assembly 'C2_scaffolds.fa.gz' --> Number of scaffolds 6114 Total size of scaffolds 119411083 Total scaffold length as percentage of known genome size 106.1% Longest scaffold 12125519 Shortest scaffold 135 Number of scaffolds > 500 nt 1022 16.7% Number of scaffolds > 1K nt 226 3.7% Number of scaffolds > 10K nt 76 1.2% Number of scaffolds > 100K nt 67 1.1% Number of scaffolds > 1M nt 36 0.6% Mean scaffold size 19531 Median scaffold size 309 N50 scaffold length 2939915 L50 scaffold count 14 NG50 scaffold length 3032585 LG50 scaffold count 13 N50 scaffold - NG50 scaffold length difference 92670 scaffold %A 26.24 scaffold %C 17.50 scaffold %G 17.52 scaffold %T 26.27 scaffold %N 12.46 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 98.4% Percentage of assembly in unscaffolded contigs 1.6% Average number of contigs per scaffold 8.7 Average length of break (>25 Ns) between contigs in scaffold 2434 Number of contigs 53273 Number of contigs in scaffolds 47558 Number of contigs not in scaffolds 5715 Total size of contigs 104645412 Longest contig 19554 Shortest contig 126 Number of contigs > 500 nt 42501 79.8% Number of contigs > 1K nt 33710 63.3% Number of contigs > 10K nt 184 0.3% Number of contigs > 100K nt 0 0.0% Number of contigs > 1M nt 0 0.0% Mean contig size 1964 Median contig size 1500 N50 contig length 3003 L50 contig count 11146 NG50 contig length 2798 LG50 contig count 12501 N50 contig - NG50 contig length difference 205 contig %A 29.95 contig %C 19.97 contig %G 20.00 contig %T 29.97 contig %N 0.11 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 Processing D1_scaffolds.fa.gz <-- Information for assembly 'D1_scaffolds.fa.gz' --> Number of scaffolds 1433 Total size of scaffolds 119175323 Total scaffold length as percentage of known genome size 105.9% Longest scaffold 10172515 Shortest scaffold 500 Number of scaffolds > 500 nt 1430 99.8% Number of scaffolds > 1K nt 533 37.2% Number of scaffolds > 10K nt 180 12.6% Number of scaffolds > 100K nt 76 5.3% Number of scaffolds > 1M nt 34 2.4% Mean scaffold size 83165 Median scaffold size 860 N50 scaffold length 2710485 L50 scaffold count 13 NG50 scaffold length 2876145 LG50 scaffold count 11 N50 scaffold - NG50 scaffold length difference 165660 scaffold %A 29.20 scaffold %C 19.82 scaffold %G 19.85 scaffold %T 29.19 scaffold %N 1.94 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 93.8% Percentage of assembly in unscaffolded contigs 6.2% Average number of contigs per scaffold 7.7 Average length of break (>25 Ns) between contigs in scaffold 1615 Number of contigs 11067 Number of contigs in scaffolds 9716 Number of contigs not in scaffolds 1351 Total size of contigs 116860825 Longest contig 207957 Shortest contig 500 Number of contigs > 500 nt 11064 100.0% Number of contigs > 1K nt 10148 91.7% Number of contigs > 10K nt 4147 37.5% Number of contigs > 100K nt 14 0.1% Number of contigs > 1M nt 0 0.0% Mean contig size 10559 Median contig size 7012 N50 contig length 17882 L50 contig count 1969 NG50 contig length 18481 LG50 contig count 1849 N50 contig - NG50 contig length difference 599 contig %A 29.78 contig %C 20.21 contig %G 20.24 contig %T 29.77 contig %N 0.00 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 Processing D2_scaffolds.fa.gz <-- Information for assembly 'D2_scaffolds.fa.gz' --> Number of scaffolds 1381 Total size of scaffolds 118740053 Total scaffold length as percentage of known genome size 105.5% Longest scaffold 10167372 Shortest scaffold 500 Number of scaffolds > 500 nt 1378 99.8% Number of scaffolds > 1K nt 502 36.4% Number of scaffolds > 10K nt 166 12.0% Number of scaffolds > 100K nt 76 5.5% Number of scaffolds > 1M nt 34 2.5% Mean scaffold size 85981 Median scaffold size 854 N50 scaffold length 2709433 L50 scaffold count 13 NG50 scaffold length 2874844 LG50 scaffold count 11 N50 scaffold - NG50 scaffold length difference 165411 scaffold %A 29.23 scaffold %C 19.84 scaffold %G 19.87 scaffold %T 29.22 scaffold %N 1.85 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 94.0% Percentage of assembly in unscaffolded contigs 6.0% Average number of contigs per scaffold 5.7 Average length of break (>25 Ns) between contigs in scaffold 1586 Number of contigs 7904 Number of contigs in scaffolds 6600 Number of contigs not in scaffolds 1304 Total size of contigs 116548634 Longest contig 207957 Shortest contig 500 Number of contigs > 500 nt 7901 100.0% Number of contigs > 1K nt 7021 88.8% Number of contigs > 10K nt 3858 48.8% Number of contigs > 100K nt 26 0.3% Number of contigs > 1M nt 0 0.0% Mean contig size 14746 Median contig size 9622 N50 contig length 26304 L50 contig count 1346 NG50 contig length 27089 LG50 contig count 1270 N50 contig - NG50 contig length difference 785 contig %A 29.78 contig %C 20.21 contig %G 20.24 contig %T 29.77 contig %N 0.00 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 Processing D3_scaffolds.fa.gz <-- Information for assembly 'D3_scaffolds.fa.gz' --> Number of scaffolds 2429 Total size of scaffolds 122066780 Total scaffold length as percentage of known genome size 108.5% Longest scaffold 2094112 Shortest scaffold 500 Number of scaffolds > 500 nt 2426 99.9% Number of scaffolds > 1K nt 1529 62.9% Number of scaffolds > 10K nt 836 34.4% Number of scaffolds > 100K nt 290 11.9% Number of scaffolds > 1M nt 7 0.3% Mean scaffold size 50254 Median scaffold size 3132 N50 scaffold length 391554 L50 scaffold count 96 NG50 scaffold length 425643 LG50 scaffold count 84 N50 scaffold - NG50 scaffold length difference 34089 scaffold %A 29.37 scaffold %C 19.93 scaffold %G 19.93 scaffold %T 29.35 scaffold %N 1.42 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 87.1% Percentage of assembly in unscaffolded contigs 12.9% Average number of contigs per scaffold 4.7 Average length of break (>25 Ns) between contigs in scaffold 715 Number of contigs 11310 Number of contigs in scaffolds 9282 Number of contigs not in scaffolds 2028 Total size of contigs 120328105 Longest contig 207957 Shortest contig 500 Number of contigs > 500 nt 11307 100.0% Number of contigs > 1K nt 10394 91.9% Number of contigs > 10K nt 4291 37.9% Number of contigs > 100K nt 14 0.1% Number of contigs > 1M nt 0 0.0% Mean contig size 10639 Median contig size 7078 N50 contig length 18021 L50 contig count 2026 NG50 contig length 19085 LG50 contig count 1814 N50 contig - NG50 contig length difference 1064 contig %A 29.79 contig %C 20.21 contig %G 20.22 contig %T 29.77 contig %N 0.00 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 Processing D4_scaffolds.fa.gz <-- Information for assembly 'D4_scaffolds.fa.gz' --> Number of scaffolds 23037 Total size of scaffolds 118787544 Total scaffold length as percentage of known genome size 105.6% Longest scaffold 207957 Shortest scaffold 200 Number of scaffolds > 500 nt 10850 47.1% Number of scaffolds > 1K nt 9952 43.2% Number of scaffolds > 10K nt 4119 17.9% Number of scaffolds > 100K nt 14 0.1% Number of scaffolds > 1M nt 0 0.0% Mean scaffold size 5156 Median scaffold size 386 N50 scaffold length 17519 L50 scaffold count 2030 NG50 scaffold length 18380 LG50 scaffold count 1855 N50 scaffold - NG50 scaffold length difference 861 scaffold %A 29.78 scaffold %C 20.23 scaffold %G 20.24 scaffold %T 29.76 scaffold %N 0.00 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 0.0% Percentage of assembly in unscaffolded contigs 100.0% Average number of contigs per scaffold 1.0 Average length of break (>25 Ns) between contigs in scaffold 0 Number of contigs 23037 Number of contigs in scaffolds 0 Number of contigs not in scaffolds 23037 Total size of contigs 118787544 Longest contig 207957 Shortest contig 200 Number of contigs > 500 nt 10850 47.1% Number of contigs > 1K nt 9952 43.2% Number of contigs > 10K nt 4119 17.9% Number of contigs > 100K nt 14 0.1% Number of contigs > 1M nt 0 0.0% Mean contig size 5156 Median contig size 386 N50 contig length 17519 L50 contig count 2030 NG50 contig length 18380 LG50 contig count 1855 N50 contig - NG50 contig length difference 861 contig %A 29.78 contig %C 20.23 contig %G 20.24 contig %T 29.76 contig %N 0.00 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 Processing E1_scaffolds.fa.gz <-- Information for assembly 'E1_scaffolds.fa.gz' --> Number of scaffolds 6166 Total size of scaffolds 122138492 Total scaffold length as percentage of known genome size 108.6% Longest scaffold 4822698 Shortest scaffold 200 Number of scaffolds > 500 nt 602 9.8% Number of scaffolds > 1K nt 293 4.8% Number of scaffolds > 10K nt 172 2.8% Number of scaffolds > 100K nt 75 1.2% Number of scaffolds > 1M nt 42 0.7% Mean scaffold size 19808 Median scaffold size 215 N50 scaffold length 2708554 L50 scaffold count 17 NG50 scaffold length 2712723 LG50 scaffold count 16 N50 scaffold - NG50 scaffold length difference 4169 scaffold %A 27.99 scaffold %C 19.05 scaffold %G 19.06 scaffold %T 28.06 scaffold %N 5.83 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 98.7% Percentage of assembly in unscaffolded contigs 1.3% Average number of contigs per scaffold 2.8 Average length of break (>25 Ns) between contigs in scaffold 1155 Number of contigs 17341 Number of contigs in scaffolds 11411 Number of contigs not in scaffolds 5930 Total size of contigs 115021309 Longest contig 251891 Shortest contig 57 Number of contigs > 500 nt 10976 63.3% Number of contigs > 1K nt 10175 58.7% Number of contigs > 10K nt 4109 23.7% Number of contigs > 100K nt 17 0.1% Number of contigs > 1M nt 0 0.0% Mean contig size 6633 Median contig size 2510 N50 contig length 16897 L50 contig count 2073 NG50 contig length 17259 LG50 contig count 1999 N50 contig - NG50 contig length difference 362 contig %A 29.72 contig %C 20.23 contig %G 20.24 contig %T 29.80 contig %N 0.01 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 Processing E2_scaffolds.fa.gz <-- Information for assembly 'E2_scaffolds.fa.gz' --> Number of scaffolds 82 Total size of scaffolds 119530310 Total scaffold length as percentage of known genome size 106.2% Longest scaffold 4822698 Shortest scaffold 16258 Number of scaffolds > 500 nt 82 100.0% Number of scaffolds > 1K nt 82 100.0% Number of scaffolds > 10K nt 82 100.0% Number of scaffolds > 100K nt 75 91.5% Number of scaffolds > 1M nt 42 51.2% Mean scaffold size 1457687 Median scaffold size 1054628 N50 scaffold length 2708554 L50 scaffold count 17 NG50 scaffold length 2712723 LG50 scaffold count 16 N50 scaffold - NG50 scaffold length difference 4169 scaffold %A 28.19 scaffold %C 19.19 scaffold %G 19.20 scaffold %T 28.27 scaffold %N 5.17 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 100.0% Percentage of assembly in unscaffolded contigs 0.0% Average number of contigs per scaffold 135.3 Average length of break (>25 Ns) between contigs in scaffold 75310 Number of contigs 11093 Number of contigs in scaffolds 11093 Number of contigs not in scaffolds 0 Total size of contigs 113361086 Longest contig 251891 Shortest contig 57 Number of contigs > 500 nt 10504 94.7% Number of contigs > 1K nt 10079 90.9% Number of contigs > 10K nt 4109 37.0% Number of contigs > 100K nt 17 0.2% Number of contigs > 1M nt 0 0.0% Mean contig size 10219 Median contig size 6919 N50 contig length 17129 L50 contig count 2024 NG50 contig length 17259 LG50 contig count 1999 N50 contig - NG50 contig length difference 130 contig %A 29.72 contig %C 20.23 contig %G 20.24 contig %T 29.80 contig %N 0.01 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 Processing E3_scaffolds.fa.gz <-- Information for assembly 'E3_scaffolds.fa.gz' --> Number of scaffolds 1937 Total size of scaffolds 113447607 Total scaffold length as percentage of known genome size 100.8% Longest scaffold 4689666 Shortest scaffold 200 Number of scaffolds > 500 nt 256 13.2% Number of scaffolds > 1K nt 146 7.5% Number of scaffolds > 10K nt 73 3.8% Number of scaffolds > 100K nt 73 3.8% Number of scaffolds > 1M nt 41 2.1% Mean scaffold size 58569 Median scaffold size 217 N50 scaffold length 2575286 L50 scaffold count 17 NG50 scaffold length 2575286 LG50 scaffold count 17 N50 scaffold - NG50 scaffold length difference 0 scaffold %A 29.74 scaffold %C 20.24 scaffold %G 20.23 scaffold %T 29.79 scaffold %N 0.00 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 0.0% Percentage of assembly in unscaffolded contigs 100.0% Average number of contigs per scaffold 1.0 Average length of break (>25 Ns) between contigs in scaffold 0 Number of contigs 1937 Number of contigs in scaffolds 0 Number of contigs not in scaffolds 1937 Total size of contigs 113447607 Longest contig 4689666 Shortest contig 200 Number of contigs > 500 nt 256 13.2% Number of contigs > 1K nt 146 7.5% Number of contigs > 10K nt 73 3.8% Number of contigs > 100K nt 73 3.8% Number of contigs > 1M nt 41 2.1% Mean contig size 58569 Median contig size 217 N50 contig length 2575286 L50 contig count 17 NG50 contig length 2575286 LG50 contig count 17 N50 contig - NG50 contig length difference 0 contig %A 29.74 contig %C 20.24 contig %G 20.23 contig %T 29.79 contig %N 0.00 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 Processing F1_scaffolds.fa.gz <-- Information for assembly 'F1_scaffolds.fa.gz' --> Number of scaffolds 44949 Total size of scaffolds 129788571 Total scaffold length as percentage of known genome size 115.4% Longest scaffold 721724 Shortest scaffold 67 Number of scaffolds > 500 nt 5369 11.9% Number of scaffolds > 1K nt 5064 11.3% Number of scaffolds > 10K nt 3501 7.8% Number of scaffolds > 100K nt 73 0.2% Number of scaffolds > 1M nt 0 0.0% Mean scaffold size 2887 Median scaffold size 131 N50 scaffold length 37403 L50 scaffold count 1046 NG50 scaffold length 42952 LG50 scaffold count 831 N50 scaffold - NG50 scaffold length difference 5549 scaffold %A 29.76 scaffold %C 20.22 scaffold %G 20.21 scaffold %T 29.78 scaffold %N 0.03 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 2663 Percentage of assembly in scaffolded contigs 15.1% Percentage of assembly in unscaffolded contigs 84.9% Average number of contigs per scaffold 1.0 Average length of break (>25 Ns) between contigs in scaffold 0 Number of contigs 45487 Number of contigs in scaffolds 1035 Number of contigs not in scaffolds 44452 Total size of contigs 129765436 Longest contig 721724 Shortest contig 67 Number of contigs > 500 nt 5813 12.8% Number of contigs > 1K nt 5492 12.1% Number of contigs > 10K nt 3662 8.1% Number of contigs > 100K nt 58 0.1% Number of contigs > 1M nt 0 0.0% Mean contig size 2853 Median contig size 131 N50 contig length 34247 L50 contig count 1138 NG50 contig length 39308 LG50 contig count 903 N50 contig - NG50 contig length difference 5061 contig %A 29.76 contig %C 20.23 contig %G 20.21 contig %T 29.79 contig %N 0.01 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 2663 Processing F2_scaffolds.fa.gz <-- Information for assembly 'F2_scaffolds.fa.gz' --> Number of scaffolds 33063 Total size of scaffolds 128848474 Total scaffold length as percentage of known genome size 114.5% Longest scaffold 721724 Shortest scaffold 67 Number of scaffolds > 500 nt 5369 16.2% Number of scaffolds > 1K nt 5064 15.3% Number of scaffolds > 10K nt 3501 10.6% Number of scaffolds > 100K nt 73 0.2% Number of scaffolds > 1M nt 0 0.0% Mean scaffold size 3897 Median scaffold size 133 N50 scaffold length 37733 L50 scaffold count 1034 NG50 scaffold length 42952 LG50 scaffold count 831 N50 scaffold - NG50 scaffold length difference 5219 scaffold %A 29.76 scaffold %C 20.23 scaffold %G 20.21 scaffold %T 29.78 scaffold %N 0.02 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 2497 Percentage of assembly in scaffolded contigs 10.6% Percentage of assembly in unscaffolded contigs 89.4% Average number of contigs per scaffold 1.0 Average length of break (>25 Ns) between contigs in scaffold 0 Number of contigs 33437 Number of contigs in scaffolds 726 Number of contigs not in scaffolds 32711 Total size of contigs 128832348 Longest contig 721724 Shortest contig 67 Number of contigs > 500 nt 5662 16.9% Number of contigs > 1K nt 5345 16.0% Number of contigs > 10K nt 3613 10.8% Number of contigs > 100K nt 63 0.2% Number of contigs > 1M nt 0 0.0% Mean contig size 3853 Median contig size 133 N50 contig length 35510 L50 contig count 1094 NG50 contig length 40359 LG50 contig count 879 N50 contig - NG50 contig length difference 4849 contig %A 29.76 contig %C 20.23 contig %G 20.21 contig %T 29.78 contig %N 0.01 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 2497 Processing F3_scaffolds.fa.gz <-- Information for assembly 'F3_scaffolds.fa.gz' --> Number of scaffolds 28678 Total size of scaffolds 131000911 Total scaffold length as percentage of known genome size 116.4% Longest scaffold 721864 Shortest scaffold 67 Number of scaffolds > 500 nt 3825 13.3% Number of scaffolds > 1K nt 3597 12.5% Number of scaffolds > 10K nt 2796 9.7% Number of scaffolds > 100K nt 188 0.7% Number of scaffolds > 1M nt 0 0.0% Mean scaffold size 4568 Median scaffold size 133 N50 scaffold length 54764 L50 scaffold count 741 NG50 scaffold length 62065 LG50 scaffold count 582 N50 scaffold - NG50 scaffold length difference 7301 scaffold %A 29.77 scaffold %C 20.21 scaffold %G 20.20 scaffold %T 29.77 scaffold %N 0.04 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 3969 Percentage of assembly in scaffolded contigs 23.5% Percentage of assembly in unscaffolded contigs 76.5% Average number of contigs per scaffold 1.0 Average length of break (>25 Ns) between contigs in scaffold 1 Number of contigs 29300 Number of contigs in scaffolds 1168 Number of contigs not in scaffolds 28132 Total size of contigs 130964214 Longest contig 721864 Shortest contig 67 Number of contigs > 500 nt 4348 14.8% Number of contigs > 1K nt 4102 14.0% Number of contigs > 10K nt 3072 10.5% Number of contigs > 100K nt 140 0.5% Number of contigs > 1M nt 0 0.0% Mean contig size 4470 Median contig size 133 N50 contig length 48200 L50 contig count 843 NG50 contig length 54850 LG50 contig count 664 N50 contig - NG50 contig length difference 6650 contig %A 29.78 contig %C 20.22 contig %G 20.21 contig %T 29.78 contig %N 0.01 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 3969 Processing F4_scaffolds.fa.gz <-- Information for assembly 'F4_scaffolds.fa.gz' --> Number of scaffolds 28681 Total size of scaffolds 130232384 Total scaffold length as percentage of known genome size 115.8% Longest scaffold 2820201 Shortest scaffold 67 Number of scaffolds > 500 nt 1052 3.7% Number of scaffolds > 1K nt 748 2.6% Number of scaffolds > 10K nt 480 1.7% Number of scaffolds > 100K nt 222 0.8% Number of scaffolds > 1M nt 28 0.1% Mean scaffold size 4541 Median scaffold size 133 N50 scaffold length 721724 L50 scaffold count 55 NG50 scaffold length 825511 LG50 scaffold count 44 N50 scaffold - NG50 scaffold length difference 103787 scaffold %A 29.46 scaffold %C 20.00 scaffold %G 20.01 scaffold %T 29.45 scaffold %N 1.08 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 2465 Percentage of assembly in scaffolded contigs 89.4% Percentage of assembly in unscaffolded contigs 10.6% Average number of contigs per scaffold 1.1 Average length of break (>25 Ns) between contigs in scaffold 49 Number of contigs 32134 Number of contigs in scaffolds 3728 Number of contigs not in scaffolds 28406 Total size of contigs 128846436 Longest contig 721724 Shortest contig 67 Number of contigs > 500 nt 4451 13.9% Number of contigs > 1K nt 4139 12.9% Number of contigs > 10K nt 3030 9.4% Number of contigs > 100K nt 135 0.4% Number of contigs > 1M nt 0 0.0% Mean contig size 4010 Median contig size 133 N50 contig length 47737 L50 contig count 817 NG50 contig length 53825 LG50 contig count 656 N50 contig - NG50 contig length difference 6088 contig %A 29.78 contig %C 20.22 contig %G 20.22 contig %T 29.77 contig %N 0.02 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 2465 Processing F5_scaffolds.fa.gz <-- Information for assembly 'F5_scaffolds.fa.gz' --> Number of scaffolds 25812 Total size of scaffolds 132224524 Total scaffold length as percentage of known genome size 117.5% Longest scaffold 4232700 Shortest scaffold 67 Number of scaffolds > 500 nt 916 3.5% Number of scaffolds > 1K nt 689 2.7% Number of scaffolds > 10K nt 513 2.0% Number of scaffolds > 100K nt 275 1.1% Number of scaffolds > 1M nt 19 0.1% Mean scaffold size 5123 Median scaffold size 133 N50 scaffold length 551979 L50 scaffold count 68 NG50 scaffold length 677662 LG50 scaffold count 52 N50 scaffold - NG50 scaffold length difference 125683 scaffold %A 29.53 scaffold %C 20.03 scaffold %G 20.02 scaffold %T 29.48 scaffold %N 0.95 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 3952 Percentage of assembly in scaffolded contigs 91.2% Percentage of assembly in unscaffolded contigs 8.8% Average number of contigs per scaffold 1.1 Average length of break (>25 Ns) between contigs in scaffold 48 Number of contigs 28683 Number of contigs in scaffolds 3201 Number of contigs not in scaffolds 25482 Total size of contigs 130989538 Longest contig 721871 Shortest contig 67 Number of contigs > 500 nt 3714 12.9% Number of contigs > 1K nt 3473 12.1% Number of contigs > 10K nt 2726 9.5% Number of contigs > 100K nt 190 0.7% Number of contigs > 1M nt 0 0.0% Mean contig size 4567 Median contig size 133 N50 contig length 56660 L50 contig count 717 NG50 contig length 65108 LG50 contig count 564 N50 contig - NG50 contig length difference 8448 contig %A 29.80 contig %C 20.22 contig %G 20.21 contig %T 29.76 contig %N 0.01 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 3952 Processing G1_scaffolds.fa.gz <-- Information for assembly 'G1_scaffolds.fa.gz' --> Number of scaffolds 966 Total size of scaffolds 117479181 Total scaffold length as percentage of known genome size 104.4% Longest scaffold 23079946 Shortest scaffold 150 Number of scaffolds > 500 nt 364 37.7% Number of scaffolds > 1K nt 183 18.9% Number of scaffolds > 10K nt 41 4.2% Number of scaffolds > 100K nt 34 3.5% Number of scaffolds > 1M nt 21 2.2% Mean scaffold size 121614 Median scaffold size 333 N50 scaffold length 9073174 L50 scaffold count 5 NG50 scaffold length 9073174 LG50 scaffold count 5 N50 scaffold - NG50 scaffold length difference 0 scaffold %A 29.10 scaffold %C 19.75 scaffold %G 19.74 scaffold %T 29.03 scaffold %N 2.38 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 99.6% Percentage of assembly in unscaffolded contigs 0.4% Average number of contigs per scaffold 15.3 Average length of break (>25 Ns) between contigs in scaffold 2897 Number of contigs 14817 Number of contigs in scaffolds 14090 Number of contigs not in scaffolds 727 Total size of contigs 114744669 Longest contig 722469 Shortest contig 100 Number of contigs > 500 nt 12154 82.0% Number of contigs > 1K nt 11111 75.0% Number of contigs > 10K nt 4019 27.1% Number of contigs > 100K nt 18 0.1% Number of contigs > 1M nt 0 0.0% Mean contig size 7744 Median contig size 4452 N50 contig length 15585 L50 contig count 2176 NG50 contig length 15913 LG50 contig count 2105 N50 contig - NG50 contig length difference 328 contig %A 29.79 contig %C 20.22 contig %G 20.21 contig %T 29.72 contig %N 0.06 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 Processing H1_scaffolds.fa.gz <-- Information for assembly 'H1_scaffolds.fa.gz' --> Number of scaffolds 3924 Total size of scaffolds 124075451 Total scaffold length as percentage of known genome size 110.3% Longest scaffold 4989023 Shortest scaffold 100 Number of scaffolds > 500 nt 2846 72.5% Number of scaffolds > 1K nt 1968 50.2% Number of scaffolds > 10K nt 158 4.0% Number of scaffolds > 100K nt 128 3.3% Number of scaffolds > 1M nt 47 1.2% Mean scaffold size 31620 Median scaffold size 1001 N50 scaffold length 1271958 L50 scaffold count 30 NG50 scaffold length 1406792 LG50 scaffold count 26 N50 scaffold - NG50 scaffold length difference 134834 scaffold %A 26.73 scaffold %C 18.21 scaffold %G 18.23 scaffold %T 26.66 scaffold %N 10.17 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 97.5% Percentage of assembly in unscaffolded contigs 2.5% Average number of contigs per scaffold 5.0 Average length of break (>25 Ns) between contigs in scaffold 3214 Number of contigs 19499 Number of contigs in scaffolds 16117 Number of contigs not in scaffolds 3382 Total size of contigs 111473322 Longest contig 722170 Shortest contig 0 Number of contigs > 500 nt 16786 86.1% Number of contigs > 1K nt 15582 79.9% Number of contigs > 10K nt 3440 17.6% Number of contigs > 100K nt 16 0.1% Number of contigs > 1M nt 0 0.0% Mean contig size 5717 Median contig size 3208 N50 contig length 11024 L50 contig count 2911 NG50 contig length 10915 LG50 contig count 2958 N50 contig - NG50 contig length difference 109 contig %A 29.75 contig %C 20.27 contig %G 20.29 contig %T 29.68 contig %N 0.01 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 Processing H2_scaffolds.fa.gz <-- Information for assembly 'H2_scaffolds.fa.gz' --> Number of scaffolds 22181 Total size of scaffolds 110280191 Total scaffold length as percentage of known genome size 98.0% Longest scaffold 541160 Shortest scaffold 100 Number of scaffolds > 500 nt 21099 95.1% Number of scaffolds > 1K nt 20123 90.7% Number of scaffolds > 10K nt 2486 11.2% Number of scaffolds > 100K nt 19 0.1% Number of scaffolds > 1M nt 0 0.0% Mean scaffold size 4972 Median scaffold size 3417 N50 scaffold length 7698 L50 scaffold count 4248 NG50 scaffold length 7538 LG50 scaffold count 4394 N50 scaffold - NG50 scaffold length difference 160 scaffold %A 29.71 scaffold %C 20.21 scaffold %G 20.24 scaffold %T 29.56 scaffold %N 0.28 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 22.2% Percentage of assembly in unscaffolded contigs 77.8% Average number of contigs per scaffold 1.2 Average length of break (>25 Ns) between contigs in scaffold 13 Number of contigs 26333 Number of contigs in scaffolds 7735 Number of contigs not in scaffolds 18598 Total size of contigs 109987924 Longest contig 541160 Shortest contig 0 Number of contigs > 500 nt 22939 87.1% Number of contigs > 1K nt 21448 81.4% Number of contigs > 10K nt 2189 8.3% Number of contigs > 100K nt 19 0.1% Number of contigs > 1M nt 0 0.0% Mean contig size 4177 Median contig size 2774 N50 contig length 6980 L50 contig count 4624 NG50 contig length 6828 LG50 contig count 4806 N50 contig - NG50 contig length difference 152 contig %A 29.79 contig %C 20.26 contig %G 20.30 contig %T 29.64 contig %N 0.01 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 Processing H3_scaffolds.fa.gz <-- Information for assembly 'H3_scaffolds.fa.gz' --> Number of scaffolds 3924 Total size of scaffolds 125050796 Total scaffold length as percentage of known genome size 111.2% Longest scaffold 5037481 Shortest scaffold 100 Number of scaffolds > 500 nt 2846 72.5% Number of scaffolds > 1K nt 1968 50.2% Number of scaffolds > 10K nt 158 4.0% Number of scaffolds > 100K nt 128 3.3% Number of scaffolds > 1M nt 47 1.2% Mean scaffold size 31868 Median scaffold size 1001 N50 scaffold length 1283620 L50 scaffold count 30 NG50 scaffold length 1421787 LG50 scaffold count 26 N50 scaffold - NG50 scaffold length difference 138167 scaffold %A 26.17 scaffold %C 17.82 scaffold %G 17.85 scaffold %T 26.10 scaffold %N 12.06 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 97.6% Percentage of assembly in unscaffolded contigs 2.4% Average number of contigs per scaffold 6.6 Average length of break (>25 Ns) between contigs in scaffold 3842 Number of contigs 25762 Number of contigs in scaffolds 22388 Number of contigs not in scaffolds 3374 Total size of contigs 109987145 Longest contig 541160 Shortest contig 0 Number of contigs > 500 nt 22679 88.0% Number of contigs > 1K nt 21204 82.3% Number of contigs > 10K nt 2217 8.6% Number of contigs > 100K nt 20 0.1% Number of contigs > 1M nt 0 0.0% Mean contig size 4269 Median contig size 2880 N50 contig length 7057 L50 contig count 4586 NG50 contig length 6900 LG50 contig count 4766 N50 contig - NG50 contig length difference 157 contig %A 29.75 contig %C 20.27 contig %G 20.29 contig %T 29.68 contig %N 0.01 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 Processing H4_scaffolds.fa.gz <-- Information for assembly 'H4_scaffolds.fa.gz' --> Number of scaffolds 8517 Total size of scaffolds 114286718 Total scaffold length as percentage of known genome size 101.6% Longest scaffold 726869 Shortest scaffold 100 Number of scaffolds > 500 nt 8333 97.8% Number of scaffolds > 1K nt 8189 96.1% Number of scaffolds > 10K nt 3587 42.1% Number of scaffolds > 100K nt 22 0.3% Number of scaffolds > 1M nt 0 0.0% Mean scaffold size 13419 Median scaffold size 7812 N50 scaffold length 24903 L50 scaffold count 1329 NG50 scaffold length 25191 LG50 scaffold count 1293 N50 scaffold - NG50 scaffold length difference 288 scaffold %A 29.68 scaffold %C 20.22 scaffold %G 20.23 scaffold %T 29.60 scaffold %N 0.26 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 53.1% Percentage of assembly in unscaffolded contigs 46.9% Average number of contigs per scaffold 1.5 Average length of break (>25 Ns) between contigs in scaffold 34 Number of contigs 12516 Number of contigs in scaffolds 6668 Number of contigs not in scaffolds 5848 Total size of contigs 114004040 Longest contig 587037 Shortest contig 0 Number of contigs > 500 nt 11419 91.2% Number of contigs > 1K nt 10975 87.7% Number of contigs > 10K nt 3784 30.2% Number of contigs > 100K nt 15 0.1% Number of contigs > 1M nt 0 0.0% Mean contig size 9109 Median contig size 5346 N50 contig length 17117 L50 contig count 1905 NG50 contig length 17411 LG50 contig count 1862 N50 contig - NG50 contig length difference 294 contig %A 29.76 contig %C 20.27 contig %G 20.28 contig %T 29.68 contig %N 0.01 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 Processing H5_scaffolds.fa.gz <-- Information for assembly 'H5_scaffolds.fa.gz' --> Number of scaffolds 12904 Total size of scaffolds 112341484 Total scaffold length as percentage of known genome size 99.9% Longest scaffold 1143876 Shortest scaffold 100 Number of scaffolds > 500 nt 12467 96.6% Number of scaffolds > 1K nt 12230 94.8% Number of scaffolds > 10K nt 3850 29.8% Number of scaffolds > 100K nt 14 0.1% Number of scaffolds > 1M nt 1 0.0% Mean scaffold size 8706 Median scaffold size 5526 N50 scaffold length 14999 L50 scaffold count 2248 NG50 scaffold length 14964 LG50 scaffold count 2254 N50 scaffold - NG50 scaffold length difference 35 scaffold %A 29.68 scaffold %C 20.23 scaffold %G 20.23 scaffold %T 29.62 scaffold %N 0.24 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 35.2% Percentage of assembly in unscaffolded contigs 64.8% Average number of contigs per scaffold 1.3 Average length of break (>25 Ns) between contigs in scaffold 21 Number of contigs 16402 Number of contigs in scaffolds 6313 Number of contigs not in scaffolds 10089 Total size of contigs 112082306 Longest contig 831935 Shortest contig 0 Number of contigs > 500 nt 14943 91.1% Number of contigs > 1K nt 14348 87.5% Number of contigs > 10K nt 3571 21.8% Number of contigs > 100K nt 15 0.1% Number of contigs > 1M nt 0 0.0% Mean contig size 6833 Median contig size 4210 N50 contig length 12130 L50 contig count 2696 NG50 contig length 12097 LG50 contig count 2713 N50 contig - NG50 contig length difference 33 contig %A 29.75 contig %C 20.28 contig %G 20.27 contig %T 29.69 contig %N 0.01 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 Processing I1_scaffolds.fa.gz <-- Information for assembly 'I1_scaffolds.fa.gz' --> Number of scaffolds 128 Total size of scaffolds 104674317 Total scaffold length as percentage of known genome size 93.0% Longest scaffold 10924052 Shortest scaffold 77 Number of scaffolds > 500 nt 73 57.0% Number of scaffolds > 1K nt 64 50.0% Number of scaffolds > 10K nt 56 43.8% Number of scaffolds > 100K nt 54 42.2% Number of scaffolds > 1M nt 31 24.2% Mean scaffold size 817768 Median scaffold size 1097 N50 scaffold length 3293136 L50 scaffold count 9 NG50 scaffold length 3254796 LG50 scaffold count 10 N50 scaffold - NG50 scaffold length difference 38340 scaffold %A 29.50 scaffold %C 20.11 scaffold %G 20.10 scaffold %T 29.51 scaffold %N 0.78 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 100.0% Percentage of assembly in unscaffolded contigs 0.0% Average number of contigs per scaffold 14.0 Average length of break (>25 Ns) between contigs in scaffold 6416 Number of contigs 1798 Number of contigs in scaffolds 1726 Number of contigs not in scaffolds 72 Total size of contigs 103898208 Longest contig 1442666 Shortest contig 64 Number of contigs > 500 nt 1457 81.0% Number of contigs > 1K nt 1351 75.1% Number of contigs > 10K nt 1071 59.6% Number of contigs > 100K nt 368 20.5% Number of contigs > 1M nt 1 0.1% Mean contig size 57785 Median contig size 20278 N50 contig length 151121 L50 contig count 200 NG50 contig length 135806 LG50 contig count 230 N50 contig - NG50 contig length difference 15315 contig %A 29.72 contig %C 20.26 contig %G 20.25 contig %T 29.73 contig %N 0.04 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 Processing I2_scaffolds.fa.gz <-- Information for assembly 'I2_scaffolds.fa.gz' --> Number of scaffolds 35661 Total size of scaffolds 121259411 Total scaffold length as percentage of known genome size 107.8% Longest scaffold 8283751 Shortest scaffold 64 Number of scaffolds > 500 nt 548 1.5% Number of scaffolds > 1K nt 77 0.2% Number of scaffolds > 10K nt 65 0.2% Number of scaffolds > 100K nt 63 0.2% Number of scaffolds > 1M nt 37 0.1% Mean scaffold size 3400 Median scaffold size 89 N50 scaffold length 2461784 L50 scaffold count 12 NG50 scaffold length 3254796 LG50 scaffold count 11 N50 scaffold - NG50 scaffold length difference 793012 scaffold %A 29.55 scaffold %C 20.11 scaffold %G 20.11 scaffold %T 29.56 scaffold %N 0.67 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 96.6% Percentage of assembly in unscaffolded contigs 3.4% Average number of contigs per scaffold 1.1 Average length of break (>25 Ns) between contigs in scaffold 22 Number of contigs 37571 Number of contigs in scaffolds 1975 Number of contigs not in scaffolds 35596 Total size of contigs 120501333 Longest contig 1442666 Shortest contig 64 Number of contigs > 500 nt 2137 5.7% Number of contigs > 1K nt 1552 4.1% Number of contigs > 10K nt 1223 3.3% Number of contigs > 100K nt 413 1.1% Number of contigs > 1M nt 1 0.0% Mean contig size 3207 Median contig size 90 N50 contig length 139666 L50 contig count 245 NG50 contig length 150434 LG50 contig count 218 N50 contig - NG50 contig length difference 10768 contig %A 29.74 contig %C 20.24 contig %G 20.23 contig %T 29.75 contig %N 0.04 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 Processing J1_scaffolds.fa.gz <-- Information for assembly 'J1_scaffolds.fa.gz' --> Number of scaffolds 4791 Total size of scaffolds 113043196 Total scaffold length as percentage of known genome size 100.5% Longest scaffold 1474238 Shortest scaffold 200 Number of scaffolds > 500 nt 2505 52.3% Number of scaffolds > 1K nt 1963 41.0% Number of scaffolds > 10K nt 537 11.2% Number of scaffolds > 100K nt 336 7.0% Number of scaffolds > 1M nt 2 0.0% Mean scaffold size 23595 Median scaffold size 556 N50 scaffold length 301691 L50 scaffold count 111 NG50 scaffold length 301691 LG50 scaffold count 111 N50 scaffold - NG50 scaffold length difference 0 scaffold %A 29.75 scaffold %C 20.22 scaffold %G 20.21 scaffold %T 29.69 scaffold %N 0.14 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 0.0% Percentage of assembly in unscaffolded contigs 100.0% Average number of contigs per scaffold 1.0 Average length of break (>25 Ns) between contigs in scaffold 32 Number of contigs 4791 Number of contigs in scaffolds 0 Number of contigs not in scaffolds 4791 Total size of contigs 113043196 Longest contig 1474238 Shortest contig 200 Number of contigs > 500 nt 2505 52.3% Number of contigs > 1K nt 1963 41.0% Number of contigs > 10K nt 537 11.2% Number of contigs > 100K nt 336 7.0% Number of contigs > 1M nt 2 0.0% Mean contig size 23595 Median contig size 556 N50 contig length 301691 L50 contig count 111 NG50 contig length 301691 LG50 contig count 111 N50 contig - NG50 contig length difference 0 contig %A 29.75 contig %C 20.22 contig %G 20.21 contig %T 29.69 contig %N 0.14 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 Processing K1_scaffolds.fa.gz <-- Information for assembly 'K1_scaffolds.fa.gz' --> Number of scaffolds 14856 Total size of scaffolds 115872926 Total scaffold length as percentage of known genome size 103.0% Longest scaffold 5949022 Shortest scaffold 100 Number of scaffolds > 500 nt 766 5.2% Number of scaffolds > 1K nt 496 3.3% Number of scaffolds > 10K nt 120 0.8% Number of scaffolds > 100K nt 90 0.6% Number of scaffolds > 1M nt 38 0.3% Mean scaffold size 7800 Median scaffold size 129 N50 scaffold length 1789861 L50 scaffold count 18 NG50 scaffold length 1801023 LG50 scaffold count 17 N50 scaffold - NG50 scaffold length difference 11162 scaffold %A 29.68 scaffold %C 19.88 scaffold %G 19.87 scaffold %T 29.76 scaffold %N 0.82 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 96.8% Percentage of assembly in unscaffolded contigs 3.2% Average number of contigs per scaffold 1.1 Average length of break (>25 Ns) between contigs in scaffold 63 Number of contigs 15689 Number of contigs in scaffolds 960 Number of contigs not in scaffolds 14729 Total size of contigs 114925837 Longest contig 788375 Shortest contig 100 Number of contigs > 500 nt 1562 10.0% Number of contigs > 1K nt 1263 8.1% Number of contigs > 10K nt 797 5.1% Number of contigs > 100K nt 407 2.6% Number of contigs > 1M nt 0 0.0% Mean contig size 7325 Median contig size 131 N50 contig length 209662 L50 contig count 169 NG50 contig length 214562 LG50 contig count 163 N50 contig - NG50 contig length difference 4900 contig %A 29.92 contig %C 20.04 contig %G 20.04 contig %T 30.00 contig %N 0.00 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 Processing K2_scaffolds.fa.gz <-- Information for assembly 'K2_scaffolds.fa.gz' --> Number of scaffolds 2043 Total size of scaffolds 113224906 Total scaffold length as percentage of known genome size 100.6% Longest scaffold 5949022 Shortest scaffold 100 Number of scaffolds > 500 nt 338 16.5% Number of scaffolds > 1K nt 244 11.9% Number of scaffolds > 10K nt 103 5.0% Number of scaffolds > 100K nt 90 4.4% Number of scaffolds > 1M nt 38 1.9% Mean scaffold size 55421 Median scaffold size 132 N50 scaffold length 1801023 L50 scaffold count 17 NG50 scaffold length 1801023 LG50 scaffold count 17 N50 scaffold - NG50 scaffold length difference 0 scaffold %A 29.73 scaffold %C 19.89 scaffold %G 19.88 scaffold %T 29.81 scaffold %N 0.69 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 98.7% Percentage of assembly in unscaffolded contigs 1.3% Average number of contigs per scaffold 1.4 Average length of break (>25 Ns) between contigs in scaffold 380 Number of contigs 2796 Number of contigs in scaffolds 848 Number of contigs not in scaffolds 1948 Total size of contigs 112447027 Longest contig 788375 Shortest contig 100 Number of contigs > 500 nt 1089 38.9% Number of contigs > 1K nt 986 35.3% Number of contigs > 10K nt 791 28.3% Number of contigs > 100K nt 407 14.6% Number of contigs > 1M nt 0 0.0% Mean contig size 40217 Median contig size 159 N50 contig length 214562 L50 contig count 163 NG50 contig length 214562 LG50 contig count 163 N50 contig - NG50 contig length difference 0 contig %A 29.93 contig %C 20.03 contig %G 20.02 contig %T 30.02 contig %N 0.00 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 Processing K3_scaffolds.fa.gz <-- Information for assembly 'K3_scaffolds.fa.gz' --> Number of scaffolds 173 Total size of scaffolds 112588332 Total scaffold length as percentage of known genome size 100.1% Longest scaffold 5949022 Shortest scaffold 100 Number of scaffolds > 500 nt 135 78.0% Number of scaffolds > 1K nt 126 72.8% Number of scaffolds > 10K nt 100 57.8% Number of scaffolds > 100K nt 90 52.0% Number of scaffolds > 1M nt 38 22.0% Mean scaffold size 650800 Median scaffold size 131182 N50 scaffold length 1801023 L50 scaffold count 17 NG50 scaffold length 1801023 LG50 scaffold count 17 N50 scaffold - NG50 scaffold length difference 0 scaffold %A 29.73 scaffold %C 19.88 scaffold %G 19.87 scaffold %T 29.82 scaffold %N 0.69 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 99.2% Percentage of assembly in unscaffolded contigs 0.8% Average number of contigs per scaffold 5.4 Average length of break (>25 Ns) between contigs in scaffold 4498 Number of contigs 926 Number of contigs in scaffolds 848 Number of contigs not in scaffolds 78 Total size of contigs 111810453 Longest contig 788375 Shortest contig 100 Number of contigs > 500 nt 886 95.7% Number of contigs > 1K nt 868 93.7% Number of contigs > 10K nt 788 85.1% Number of contigs > 100K nt 407 44.0% Number of contigs > 1M nt 0 0.0% Mean contig size 120746 Median contig size 81841 N50 contig length 216393 L50 contig count 162 NG50 contig length 214562 LG50 contig count 163 N50 contig - NG50 contig length difference 1831 contig %A 29.94 contig %C 20.02 contig %G 20.01 contig %T 30.03 contig %N 0.00 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 Processing L1_scaffolds.fa.gz <-- Information for assembly 'L1_scaffolds.fa.gz' --> Number of scaffolds 14822 Total size of scaffolds 124310199 Total scaffold length as percentage of known genome size 110.5% Longest scaffold 128347 Shortest scaffold 404 Number of scaffolds > 500 nt 14820 100.0% Number of scaffolds > 1K nt 14799 99.8% Number of scaffolds > 10K nt 3457 23.3% Number of scaffolds > 100K nt 11 0.1% Number of scaffolds > 1M nt 0 0.0% Mean scaffold size 8387 Median scaffold size 3810 N50 scaffold length 20165 L50 scaffold count 1762 NG50 scaffold length 22716 LG50 scaffold count 1487 N50 scaffold - NG50 scaffold length difference 2551 scaffold %A 29.87 scaffold %C 20.10 scaffold %G 20.12 scaffold %T 29.91 scaffold %N 0.00 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 0.0% Percentage of assembly in unscaffolded contigs 100.0% Average number of contigs per scaffold 1.0 Average length of break (>25 Ns) between contigs in scaffold 0 Number of contigs 14822 Number of contigs in scaffolds 0 Number of contigs not in scaffolds 14822 Total size of contigs 124310199 Longest contig 128347 Shortest contig 404 Number of contigs > 500 nt 14820 100.0% Number of contigs > 1K nt 14799 99.8% Number of contigs > 10K nt 3457 23.3% Number of contigs > 100K nt 11 0.1% Number of contigs > 1M nt 0 0.0% Mean contig size 8387 Median contig size 3810 N50 contig length 20165 L50 contig count 1762 NG50 contig length 22716 LG50 contig count 1487 N50 contig - NG50 contig length difference 2551 contig %A 29.87 contig %C 20.10 contig %G 20.12 contig %T 29.91 contig %N 0.00 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 Processing M1_scaffolds.fa.gz <-- Information for assembly 'M1_scaffolds.fa.gz' --> Number of scaffolds 657 Total size of scaffolds 154090743 Total scaffold length as percentage of known genome size 137.0% Longest scaffold 4022579 Shortest scaffold 892 Number of scaffolds > 500 nt 657 100.0% Number of scaffolds > 1K nt 505 76.9% Number of scaffolds > 10K nt 275 41.9% Number of scaffolds > 100K nt 214 32.6% Number of scaffolds > 1M nt 40 6.1% Mean scaffold size 234537 Median scaffold size 1418 N50 scaffold length 901975 L50 scaffold count 48 NG50 scaffold length 1417207 LG50 scaffold count 29 N50 scaffold - NG50 scaffold length difference 515232 scaffold %A 29.59 scaffold %C 20.15 scaffold %G 20.16 scaffold %T 29.49 scaffold %N 0.61 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 99.3% Percentage of assembly in unscaffolded contigs 0.7% Average number of contigs per scaffold 6.8 Average length of break (>25 Ns) between contigs in scaffold 1435 Number of contigs 4477 Number of contigs in scaffolds 4191 Number of contigs not in scaffolds 286 Total size of contigs 153149674 Longest contig 1239957 Shortest contig 157 Number of contigs > 500 nt 4279 95.6% Number of contigs > 1K nt 4024 89.9% Number of contigs > 10K nt 3009 67.2% Number of contigs > 100K nt 280 6.3% Number of contigs > 1M nt 2 0.0% Mean contig size 34208 Median contig size 21167 N50 contig length 65510 L50 contig count 696 NG50 contig length 84611 LG50 contig count 423 N50 contig - NG50 contig length difference 19101 contig %A 29.77 contig %C 20.28 contig %G 20.29 contig %T 29.67 contig %N 0.00 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 Processing M2_scaffolds.fa.gz <-- Information for assembly 'M2_scaffolds.fa.gz' --> Number of scaffolds 5000 Total size of scaffolds 117797484 Total scaffold length as percentage of known genome size 104.7% Longest scaffold 959012 Shortest scaffold 892 Number of scaffolds > 500 nt 5000 100.0% Number of scaffolds > 1K nt 4834 96.7% Number of scaffolds > 10K nt 3050 61.0% Number of scaffolds > 100K nt 106 2.1% Number of scaffolds > 1M nt 0 0.0% Mean scaffold size 23559 Median scaffold size 14900 N50 scaffold length 41766 L50 scaffold count 808 NG50 scaffold length 43844 LG50 scaffold count 746 N50 scaffold - NG50 scaffold length difference 2078 scaffold %A 29.74 scaffold %C 20.21 scaffold %G 20.27 scaffold %T 29.74 scaffold %N 0.04 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 22.0% Percentage of assembly in unscaffolded contigs 78.0% Average number of contigs per scaffold 1.2 Average length of break (>25 Ns) between contigs in scaffold 9 Number of contigs 5780 Number of contigs in scaffolds 1395 Number of contigs not in scaffolds 4385 Total size of contigs 117752457 Longest contig 959012 Shortest contig 157 Number of contigs > 500 nt 5563 96.2% Number of contigs > 1K nt 5299 91.7% Number of contigs > 10K nt 3301 57.1% Number of contigs > 100K nt 68 1.2% Number of contigs > 1M nt 0 0.0% Mean contig size 20372 Median contig size 13168 N50 contig length 36443 L50 contig count 941 NG50 contig length 38171 LG50 contig count 871 N50 contig - NG50 contig length difference 1728 contig %A 29.75 contig %C 20.22 contig %G 20.27 contig %T 29.76 contig %N 0.00 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 Processing M3_scaffolds.fa.gz <-- Information for assembly 'M3_scaffolds.fa.gz' --> Number of scaffolds 40344 Total size of scaffolds 169568979 Total scaffold length as percentage of known genome size 150.7% Longest scaffold 3720691 Shortest scaffold 101 Number of scaffolds > 500 nt 5011 12.4% Number of scaffolds > 1K nt 1237 3.1% Number of scaffolds > 10K nt 650 1.6% Number of scaffolds > 100K nt 281 0.7% Number of scaffolds > 1M nt 31 0.1% Mean scaffold size 4203 Median scaffold size 306 N50 scaffold length 630371 L50 scaffold count 81 NG50 scaffold length 836600 LG50 scaffold count 42 N50 scaffold - NG50 scaffold length difference 206229 scaffold %A 28.94 scaffold %C 19.77 scaffold %G 19.71 scaffold %T 28.96 scaffold %N 2.61 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 91.1% Percentage of assembly in unscaffolded contigs 8.9% Average number of contigs per scaffold 1.1 Average length of break (>25 Ns) between contigs in scaffold 109 Number of contigs 45200 Number of contigs in scaffolds 6070 Number of contigs not in scaffolds 39130 Total size of contigs 165152290 Longest contig 1240157 Shortest contig 101 Number of contigs > 500 nt 8436 18.7% Number of contigs > 1K nt 4122 9.1% Number of contigs > 10K nt 3002 6.6% Number of contigs > 100K nt 268 0.6% Number of contigs > 1M nt 3 0.0% Mean contig size 3654 Median contig size 324 N50 contig length 58916 L50 contig count 810 NG50 contig length 83445 LG50 contig count 433 N50 contig - NG50 contig length difference 24529 contig %A 29.72 contig %C 20.30 contig %G 20.24 contig %T 29.74 contig %N 0.00 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 Processing M4_scaffolds.fa.gz <-- Information for assembly 'M4_scaffolds.fa.gz' --> Number of scaffolds 158 Total size of scaffolds 118319732 Total scaffold length as percentage of known genome size 105.2% Longest scaffold 3518296 Shortest scaffold 4447 Number of scaffolds > 500 nt 158 100.0% Number of scaffolds > 1K nt 158 100.0% Number of scaffolds > 10K nt 154 97.5% Number of scaffolds > 100K nt 143 90.5% Number of scaffolds > 1M nt 38 24.1% Mean scaffold size 748859 Median scaffold size 515477 N50 scaffold length 1225267 L50 scaffold count 30 NG50 scaffold length 1350048 LG50 scaffold count 28 N50 scaffold - NG50 scaffold length difference 124781 scaffold %A 29.16 scaffold %C 19.89 scaffold %G 19.93 scaffold %T 29.15 scaffold %N 1.87 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 99.8% Percentage of assembly in unscaffolded contigs 0.2% Average number of contigs per scaffold 16.9 Average length of break (>25 Ns) between contigs in scaffold 14014 Number of contigs 2672 Number of contigs in scaffolds 2662 Number of contigs not in scaffolds 10 Total size of contigs 116106704 Longest contig 1239957 Shortest contig 3663 Number of contigs > 500 nt 2672 100.0% Number of contigs > 1K nt 2672 100.0% Number of contigs > 10K nt 2251 84.2% Number of contigs > 100K nt 223 8.3% Number of contigs > 1M nt 2 0.1% Mean contig size 43453 Median contig size 30803 N50 contig length 67017 L50 contig count 516 NG50 contig length 68799 LG50 contig count 489 N50 contig - NG50 contig length difference 1782 contig %A 29.72 contig %C 20.27 contig %G 20.31 contig %T 29.70 contig %N 0.00 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 Processing M5_scaffolds.fa.gz <-- Information for assembly 'M5_scaffolds.fa.gz' --> Number of scaffolds 2500 Total size of scaffolds 153736947 Total scaffold length as percentage of known genome size 136.7% Longest scaffold 2390989 Shortest scaffold 832 Number of scaffolds > 500 nt 2500 100.0% Number of scaffolds > 1K nt 2390 95.6% Number of scaffolds > 10K nt 2120 84.8% Number of scaffolds > 100K nt 481 19.2% Number of scaffolds > 1M nt 3 0.1% Mean scaffold size 61495 Median scaffold size 38619 N50 scaffold length 110135 L50 scaffold count 410 NG50 scaffold length 147982 LG50 scaffold count 246 N50 scaffold - NG50 scaffold length difference 37847 scaffold %A 23.61 scaffold %C 16.09 scaffold %G 16.05 scaffold %T 23.62 scaffold %N 20.63 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 99.9% Percentage of assembly in unscaffolded contigs 0.1% Average number of contigs per scaffold 5.6 Average length of break (>25 Ns) between contigs in scaffold 12689 Number of contigs 13998 Number of contigs in scaffolds 13846 Number of contigs not in scaffolds 152 Total size of contigs 122016803 Longest contig 1111891 Shortest contig 118 Number of contigs > 500 nt 7262 51.9% Number of contigs > 1K nt 5075 36.3% Number of contigs > 10K nt 3294 23.5% Number of contigs > 100K nt 69 0.5% Number of contigs > 1M nt 1 0.0% Mean contig size 8717 Median contig size 524 N50 contig length 36938 L50 contig count 978 NG50 contig length 40037 LG50 contig count 855 N50 contig - NG50 contig length difference 3099 contig %A 29.75 contig %C 20.28 contig %G 20.22 contig %T 29.75 contig %N 0.00 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 Processing N1_scaffolds.fa.gz <-- Information for assembly 'N1_scaffolds.fa.gz' --> Number of scaffolds 31423 Total size of scaffolds 139774320 Total scaffold length as percentage of known genome size 124.2% Longest scaffold 26513 Shortest scaffold 1081 Number of scaffolds > 500 nt 31423 100.0% Number of scaffolds > 1K nt 31423 100.0% Number of scaffolds > 10K nt 1865 5.9% Number of scaffolds > 100K nt 0 0.0% Number of scaffolds > 1M nt 0 0.0% Mean scaffold size 4448 Median scaffold size 3571 N50 scaffold length 5741 L50 scaffold count 8103 NG50 scaffold length 6704 LG50 scaffold count 5907 N50 scaffold - NG50 scaffold length difference 963 scaffold %A 28.24 scaffold %C 18.94 scaffold %G 18.91 scaffold %T 28.44 scaffold %N 5.46 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 85.0% Percentage of assembly in unscaffolded contigs 15.0% Average number of contigs per scaffold 2.8 Average length of break (>25 Ns) between contigs in scaffold 243 Number of contigs 86428 Number of contigs in scaffolds 77317 Number of contigs not in scaffolds 9111 Total size of contigs 132226959 Longest contig 11501 Shortest contig 1 Number of contigs > 500 nt 63409 73.4% Number of contigs > 1K nt 51141 59.2% Number of contigs > 10K nt 20 0.0% Number of contigs > 100K nt 0 0.0% Number of contigs > 1M nt 0 0.0% Mean contig size 1530 Median contig size 1270 N50 contig length 2387 L50 contig count 18606 NG50 contig length 2676 LG50 contig count 14700 N50 contig - NG50 contig length difference 289 contig %A 29.86 contig %C 20.02 contig %G 19.99 contig %T 30.07 contig %N 0.07 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 Processing N2_scaffolds.fa.gz <-- Information for assembly 'N2_scaffolds.fa.gz' --> Number of scaffolds 33787 Total size of scaffolds 113389083 Total scaffold length as percentage of known genome size 100.8% Longest scaffold 18206 Shortest scaffold 1082 Number of scaffolds > 500 nt 33787 100.0% Number of scaffolds > 1K nt 33787 100.0% Number of scaffolds > 10K nt 359 1.1% Number of scaffolds > 100K nt 0 0.0% Number of scaffolds > 1M nt 0 0.0% Mean scaffold size 3356 Median scaffold size 2811 N50 scaffold length 4035 L50 scaffold count 9591 NG50 scaffold length 4061 LG50 scaffold count 9481 N50 scaffold - NG50 scaffold length difference 26 scaffold %A 28.28 scaffold %C 18.98 scaffold %G 18.96 scaffold %T 28.52 scaffold %N 5.25 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 73.3% Percentage of assembly in unscaffolded contigs 26.7% Average number of contigs per scaffold 2.1 Average length of break (>25 Ns) between contigs in scaffold 176 Number of contigs 69948 Number of contigs in scaffolds 56215 Number of contigs not in scaffolds 13733 Total size of contigs 107460922 Longest contig 10764 Shortest contig 1 Number of contigs > 500 nt 53749 76.8% Number of contigs > 1K nt 45410 64.9% Number of contigs > 10K nt 3 0.0% Number of contigs > 100K nt 0 0.0% Number of contigs > 1M nt 0 0.0% Mean contig size 1536 Median contig size 1365 N50 contig length 2204 L50 contig count 16690 NG50 contig length 2129 LG50 contig count 17853 N50 contig - NG50 contig length difference 75 contig %A 29.84 contig %C 20.03 contig %G 20.01 contig %T 30.10 contig %N 0.02 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 Processing N3_scaffolds.fa.gz <-- Information for assembly 'N3_scaffolds.fa.gz' --> Number of scaffolds 24298 Total size of scaffolds 146503047 Total scaffold length as percentage of known genome size 130.2% Longest scaffold 40835 Shortest scaffold 1082 Number of scaffolds > 500 nt 24298 100.0% Number of scaffolds > 1K nt 24298 100.0% Number of scaffolds > 10K nt 3631 14.9% Number of scaffolds > 100K nt 0 0.0% Number of scaffolds > 1M nt 0 0.0% Mean scaffold size 6029 Median scaffold size 5016 N50 scaffold length 7850 L50 scaffold count 6300 NG50 scaffold length 9358 LG50 scaffold count 4317 N50 scaffold - NG50 scaffold length difference 1508 scaffold %A 27.61 scaffold %C 18.51 scaffold %G 18.48 scaffold %T 27.78 scaffold %N 7.62 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 95.5% Percentage of assembly in unscaffolded contigs 4.5% Average number of contigs per scaffold 4.3 Average length of break (>25 Ns) between contigs in scaffold 459 Number of contigs 103555 Number of contigs in scaffolds 100634 Number of contigs not in scaffolds 2921 Total size of contigs 135479743 Longest contig 14662 Shortest contig 1 Number of contigs > 500 nt 69424 67.0% Number of contigs > 1K nt 51787 50.0% Number of contigs > 10K nt 12 0.0% Number of contigs > 100K nt 0 0.0% Number of contigs > 1M nt 0 0.0% Mean contig size 1308 Median contig size 1001 N50 contig length 2196 L50 contig count 20445 NG50 contig length 2526 LG50 contig count 15562 N50 contig - NG50 contig length difference 330 contig %A 29.86 contig %C 20.01 contig %G 19.99 contig %T 30.04 contig %N 0.11 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 Processing O1_scaffolds.fa.gz <-- Information for assembly 'O1_scaffolds.fa.gz' --> Number of scaffolds 14994 Total size of scaffolds 90333710 Total scaffold length as percentage of known genome size 80.3% Longest scaffold 74215 Shortest scaffold 2000 Number of scaffolds > 500 nt 14994 100.0% Number of scaffolds > 1K nt 14994 100.0% Number of scaffolds > 10K nt 2267 15.1% Number of scaffolds > 100K nt 0 0.0% Number of scaffolds > 1M nt 0 0.0% Mean scaffold size 6025 Median scaffold size 4360 N50 scaffold length 7847 L50 scaffold count 3543 NG50 scaffold length 6000 LG50 scaffold count 5153 N50 scaffold - NG50 scaffold length difference 1847 scaffold %A 29.94 scaffold %C 20.06 scaffold %G 20.07 scaffold %T 29.93 scaffold %N 0.00 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 0.0% Percentage of assembly in unscaffolded contigs 100.0% Average number of contigs per scaffold 1.0 Average length of break (>25 Ns) between contigs in scaffold 0 Number of contigs 14994 Number of contigs in scaffolds 0 Number of contigs not in scaffolds 14994 Total size of contigs 90333710 Longest contig 74215 Shortest contig 2000 Number of contigs > 500 nt 14994 100.0% Number of contigs > 1K nt 14994 100.0% Number of contigs > 10K nt 2267 15.1% Number of contigs > 100K nt 0 0.0% Number of contigs > 1M nt 0 0.0% Mean contig size 6025 Median contig size 4360 N50 contig length 7847 L50 contig count 3543 NG50 contig length 6000 LG50 contig count 5153 N50 contig - NG50 contig length difference 1847 contig %A 29.94 contig %C 20.06 contig %G 20.07 contig %T 29.93 contig %N 0.00 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 Processing P1_scaffolds.fa.gz <-- Information for assembly 'P1_scaffolds.fa.gz' --> Number of scaffolds 4143 Total size of scaffolds 114258553 Total scaffold length as percentage of known genome size 101.6% Longest scaffold 4397505 Shortest scaffold 100 Number of scaffolds > 500 nt 905 21.8% Number of scaffolds > 1K nt 316 7.6% Number of scaffolds > 10K nt 125 3.0% Number of scaffolds > 100K nt 116 2.8% Number of scaffolds > 1M nt 42 1.0% Mean scaffold size 27579 Median scaffold size 175 N50 scaffold length 1707112 L50 scaffold count 24 NG50 scaffold length 1716225 LG50 scaffold count 23 N50 scaffold - NG50 scaffold length difference 9113 scaffold %A 29.83 scaffold %C 19.94 scaffold %G 19.95 scaffold %T 29.86 scaffold %N 0.42 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 93.9% Percentage of assembly in unscaffolded contigs 6.1% Average number of contigs per scaffold 1.1 Average length of break (>25 Ns) between contigs in scaffold 115 Number of contigs 4566 Number of contigs in scaffolds 521 Number of contigs not in scaffolds 4045 Total size of contigs 113781081 Longest contig 1814562 Shortest contig 100 Number of contigs > 500 nt 1321 28.9% Number of contigs > 1K nt 730 16.0% Number of contigs > 10K nt 510 11.2% Number of contigs > 100K nt 343 7.5% Number of contigs > 1M nt 4 0.1% Mean contig size 24919 Median contig size 205 N50 contig length 343889 L50 contig count 103 NG50 contig length 346960 LG50 contig count 101 N50 contig - NG50 contig length difference 3071 contig %A 29.96 contig %C 20.02 contig %G 20.03 contig %T 29.98 contig %N 0.00 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 Processing Q1_scaffolds.fa.gz <-- Information for assembly 'Q1_scaffolds.fa.gz' --> Number of scaffolds 990 Total size of scaffolds 120855878 Total scaffold length as percentage of known genome size 107.4% Longest scaffold 17101185 Shortest scaffold 1004 Number of scaffolds > 500 nt 990 100.0% Number of scaffolds > 1K nt 990 100.0% Number of scaffolds > 10K nt 123 12.4% Number of scaffolds > 100K nt 36 3.6% Number of scaffolds > 1M nt 20 2.0% Mean scaffold size 122077 Median scaffold size 4528 N50 scaffold length 8285827 L50 scaffold count 6 NG50 scaffold length 8396795 LG50 scaffold count 5 N50 scaffold - NG50 scaffold length difference 110968 scaffold %A 29.34 scaffold %C 19.81 scaffold %G 19.81 scaffold %T 29.33 scaffold %N 1.70 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 93.5% Percentage of assembly in unscaffolded contigs 6.5% Average number of contigs per scaffold 2.0 Average length of break (>25 Ns) between contigs in scaffold 2077 Number of contigs 1946 Number of contigs in scaffolds 1000 Number of contigs not in scaffolds 946 Total size of contigs 119174112 Longest contig 858807 Shortest contig 1 Number of contigs > 500 nt 1869 96.0% Number of contigs > 1K nt 1861 95.6% Number of contigs > 10K nt 904 46.5% Number of contigs > 100K nt 397 20.4% Number of contigs > 1M nt 0 0.0% Mean contig size 61241 Median contig size 8554 N50 contig length 208256 L50 contig count 181 NG50 contig length 219906 LG50 contig count 165 N50 contig - NG50 contig length difference 11650 contig %A 29.76 contig %C 20.09 contig %G 20.09 contig %T 29.75 contig %N 0.31 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 Processing V1_scaffolds.fa.gz <-- Information for assembly 'V1_scaffolds.fa.gz' --> Number of scaffolds 3230202 Total size of scaffolds 227922042 Total scaffold length as percentage of known genome size 202.6% Longest scaffold 352 Shortest scaffold 61 Number of scaffolds > 500 nt 0 0.0% Number of scaffolds > 1K nt 0 0.0% Number of scaffolds > 10K nt 0 0.0% Number of scaffolds > 100K nt 0 0.0% Number of scaffolds > 1M nt 0 0.0% Mean scaffold size 71 Median scaffold size 61 N50 scaffold length 63 L50 scaffold count 1365014 NG50 scaffold length 82 LG50 scaffold count 557254 N50 scaffold - NG50 scaffold length difference 19 scaffold %A 29.58 scaffold %C 20.44 scaffold %G 20.39 scaffold %T 29.60 scaffold %N 0.00 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 0.0% Percentage of assembly in unscaffolded contigs 100.0% Average number of contigs per scaffold 1.0 Average length of break (>25 Ns) between contigs in scaffold 0 Number of contigs 3230202 Number of contigs in scaffolds 0 Number of contigs not in scaffolds 3230202 Total size of contigs 227922042 Longest contig 352 Shortest contig 61 Number of contigs > 500 nt 0 0.0% Number of contigs > 1K nt 0 0.0% Number of contigs > 10K nt 0 0.0% Number of contigs > 100K nt 0 0.0% Number of contigs > 1M nt 0 0.0% Mean contig size 71 Median contig size 61 N50 contig length 63 L50 contig count 1365014 NG50 contig length 82 LG50 contig count 557254 N50 contig - NG50 contig length difference 19 contig %A 29.58 contig %C 20.44 contig %G 20.39 contig %T 29.60 contig %N 0.00 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 Processing V2_scaffolds.fa.gz <-- Information for assembly 'V2_scaffolds.fa.gz' --> Number of scaffolds 3239006 Total size of scaffolds 228736023 Total scaffold length as percentage of known genome size 203.3% Longest scaffold 367 Shortest scaffold 61 Number of scaffolds > 500 nt 0 0.0% Number of scaffolds > 1K nt 0 0.0% Number of scaffolds > 10K nt 0 0.0% Number of scaffolds > 100K nt 0 0.0% Number of scaffolds > 1M nt 0 0.0% Mean scaffold size 71 Median scaffold size 61 N50 scaffold length 64 L50 scaffold count 1367408 NG50 scaffold length 82 LG50 scaffold count 556281 N50 scaffold - NG50 scaffold length difference 18 scaffold %A 29.56 scaffold %C 20.47 scaffold %G 20.36 scaffold %T 29.62 scaffold %N 0.00 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 0.0% Percentage of assembly in unscaffolded contigs 100.0% Average number of contigs per scaffold 1.0 Average length of break (>25 Ns) between contigs in scaffold 0 Number of contigs 3239006 Number of contigs in scaffolds 0 Number of contigs not in scaffolds 3239006 Total size of contigs 228736023 Longest contig 367 Shortest contig 61 Number of contigs > 500 nt 0 0.0% Number of contigs > 1K nt 0 0.0% Number of contigs > 10K nt 0 0.0% Number of contigs > 100K nt 0 0.0% Number of contigs > 1M nt 0 0.0% Mean contig size 71 Median contig size 61 N50 contig length 64 L50 contig count 1367408 NG50 contig length 82 LG50 contig count 556281 N50 contig - NG50 contig length difference 18 contig %A 29.56 contig %C 20.47 contig %G 20.36 contig %T 29.62 contig %N 0.00 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 Processing V3_scaffolds.fa.gz <-- Information for assembly 'V3_scaffolds.fa.gz' --> Number of scaffolds 3243118 Total size of scaffolds 228987512 Total scaffold length as percentage of known genome size 203.5% Longest scaffold 503 Shortest scaffold 61 Number of scaffolds > 500 nt 1 0.0% Number of scaffolds > 1K nt 0 0.0% Number of scaffolds > 10K nt 0 0.0% Number of scaffolds > 100K nt 0 0.0% Number of scaffolds > 1M nt 0 0.0% Mean scaffold size 71 Median scaffold size 61 N50 scaffold length 63 L50 scaffold count 1369364 NG50 scaffold length 82 LG50 scaffold count 556288 N50 scaffold - NG50 scaffold length difference 19 scaffold %A 29.56 scaffold %C 20.46 scaffold %G 20.36 scaffold %T 29.62 scaffold %N 0.00 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 0.0% Percentage of assembly in unscaffolded contigs 100.0% Average number of contigs per scaffold 1.0 Average length of break (>25 Ns) between contigs in scaffold 0 Number of contigs 3243118 Number of contigs in scaffolds 0 Number of contigs not in scaffolds 3243118 Total size of contigs 228987512 Longest contig 503 Shortest contig 61 Number of contigs > 500 nt 1 0.0% Number of contigs > 1K nt 0 0.0% Number of contigs > 10K nt 0 0.0% Number of contigs > 100K nt 0 0.0% Number of contigs > 1M nt 0 0.0% Mean contig size 71 Median contig size 61 N50 contig length 63 L50 contig count 1369364 NG50 contig length 82 LG50 contig count 556288 N50 contig - NG50 contig length difference 19 contig %A 29.56 contig %C 20.46 contig %G 20.36 contig %T 29.62 contig %N 0.00 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 Processing V4_scaffolds.fa.gz <-- Information for assembly 'V4_scaffolds.fa.gz' --> Number of scaffolds 32617 Total size of scaffolds 127185684 Total scaffold length as percentage of known genome size 113.1% Longest scaffold 4743985 Shortest scaffold 61 Number of scaffolds > 500 nt 1324 4.1% Number of scaffolds > 1K nt 689 2.1% Number of scaffolds > 10K nt 278 0.9% Number of scaffolds > 100K nt 207 0.6% Number of scaffolds > 1M nt 32 0.1% Mean scaffold size 3899 Median scaffold size 69 N50 scaffold length 798306 L50 scaffold count 46 NG50 scaffold length 879312 LG50 scaffold count 38 N50 scaffold - NG50 scaffold length difference 81006 scaffold %A 27.28 scaffold %C 18.53 scaffold %G 18.54 scaffold %T 27.22 scaffold %N 8.42 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 97.1% Percentage of assembly in unscaffolded contigs 2.9% Average number of contigs per scaffold 1.6 Average length of break (>25 Ns) between contigs in scaffold 328 Number of contigs 51760 Number of contigs in scaffolds 19633 Number of contigs not in scaffolds 32127 Total size of contigs 116549762 Longest contig 1368779 Shortest contig 51 Number of contigs > 500 nt 19175 37.0% Number of contigs > 1K nt 17258 33.3% Number of contigs > 10K nt 3080 6.0% Number of contigs > 100K nt 12 0.0% Number of contigs > 1M nt 1 0.0% Mean contig size 2252 Median contig size 92 N50 contig length 8856 L50 contig count 3838 NG50 contig length 9192 LG50 contig count 3613 N50 contig - NG50 contig length difference 336 contig %A 29.77 contig %C 20.22 contig %G 20.23 contig %T 29.71 contig %N 0.07 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 Processing V5_scaffolds.fa.gz <-- Information for assembly 'V5_scaffolds.fa.gz' --> Number of scaffolds 44364 Total size of scaffolds 117239847 Total scaffold length as percentage of known genome size 104.2% Longest scaffold 134380 Shortest scaffold 61 Number of scaffolds > 500 nt 12376 27.9% Number of scaffolds > 1K nt 11531 26.0% Number of scaffolds > 10K nt 4091 9.2% Number of scaffolds > 100K nt 3 0.0% Number of scaffolds > 1M nt 0 0.0% Mean scaffold size 2643 Median scaffold size 78 N50 scaffold length 14739 L50 scaffold count 2386 NG50 scaffold length 15369 LG50 scaffold count 2229 N50 scaffold - NG50 scaffold length difference 630 scaffold %A 29.62 scaffold %C 20.12 scaffold %G 20.15 scaffold %T 29.60 scaffold %N 0.50 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 64.6% Percentage of assembly in unscaffolded contigs 35.4% Average number of contigs per scaffold 1.2 Average length of break (>25 Ns) between contigs in scaffold 13 Number of contigs 53949 Number of contigs in scaffolds 14996 Number of contigs not in scaffolds 38953 Total size of contigs 116706574 Longest contig 121503 Shortest contig 51 Number of contigs > 500 nt 20744 38.5% Number of contigs > 1K nt 18817 34.9% Number of contigs > 10K nt 2993 5.5% Number of contigs > 100K nt 2 0.0% Number of contigs > 1M nt 0 0.0% Mean contig size 2163 Median contig size 98 N50 contig length 8141 L50 contig count 4284 NG50 contig length 8473 LG50 contig count 4031 N50 contig - NG50 contig length difference 332 contig %A 29.76 contig %C 20.21 contig %G 20.25 contig %T 29.74 contig %N 0.05 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 Processing V6_scaffolds.fa.gz <-- Information for assembly 'V6_scaffolds.fa.gz' --> Number of scaffolds 65820 Total size of scaffolds 116793074 Total scaffold length as percentage of known genome size 103.8% Longest scaffold 132122 Shortest scaffold 61 Number of scaffolds > 500 nt 28662 43.5% Number of scaffolds > 1K nt 24833 37.7% Number of scaffolds > 10K nt 1607 2.4% Number of scaffolds > 100K nt 2 0.0% Number of scaffolds > 1M nt 0 0.0% Mean scaffold size 1774 Median scaffold size 220 N50 scaffold length 5468 L50 scaffold count 6344 NG50 scaffold length 5671 LG50 scaffold count 5958 N50 scaffold - NG50 scaffold length difference 203 scaffold %A 29.76 scaffold %C 20.23 scaffold %G 20.23 scaffold %T 29.75 scaffold %N 0.02 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 0.1% Percentage of assembly in unscaffolded contigs 99.9% Average number of contigs per scaffold 1.0 Average length of break (>25 Ns) between contigs in scaffold 0 Number of contigs 65834 Number of contigs in scaffolds 28 Number of contigs not in scaffolds 65806 Total size of contigs 116792643 Longest contig 132122 Shortest contig 61 Number of contigs > 500 nt 28671 43.6% Number of contigs > 1K nt 24840 37.7% Number of contigs > 10K nt 1603 2.4% Number of contigs > 100K nt 2 0.0% Number of contigs > 1M nt 0 0.0% Mean contig size 1774 Median contig size 220 N50 contig length 5467 L50 contig count 6349 NG50 contig length 5665 LG50 contig count 5963 N50 contig - NG50 contig length difference 198 contig %A 29.76 contig %C 20.23 contig %G 20.23 contig %T 29.75 contig %N 0.02 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 Processing W10_scaffolds.fa.gz <-- Information for assembly 'W10_scaffolds.fa.gz' --> Number of scaffolds 24778 Total size of scaffolds 115023920 Total scaffold length as percentage of known genome size 102.2% Longest scaffold 364958 Shortest scaffold 108 Number of scaffolds > 500 nt 21385 86.3% Number of scaffolds > 1K nt 18900 76.3% Number of scaffolds > 10K nt 2880 11.6% Number of scaffolds > 100K nt 20 0.1% Number of scaffolds > 1M nt 0 0.0% Mean scaffold size 4642 Median scaffold size 2992 N50 scaffold length 8190 L50 scaffold count 4144 NG50 scaffold length 8380 LG50 scaffold count 3992 N50 scaffold - NG50 scaffold length difference 190 scaffold %A 29.78 scaffold %C 20.23 scaffold %G 20.25 scaffold %T 29.74 scaffold %N 0.00 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 0.0% Percentage of assembly in unscaffolded contigs 100.0% Average number of contigs per scaffold 1.0 Average length of break (>25 Ns) between contigs in scaffold 0 Number of contigs 24778 Number of contigs in scaffolds 0 Number of contigs not in scaffolds 24778 Total size of contigs 115023920 Longest contig 364958 Shortest contig 108 Number of contigs > 500 nt 21385 86.3% Number of contigs > 1K nt 18900 76.3% Number of contigs > 10K nt 2880 11.6% Number of contigs > 100K nt 20 0.1% Number of contigs > 1M nt 0 0.0% Mean contig size 4642 Median contig size 2992 N50 contig length 8190 L50 contig count 4144 NG50 contig length 8380 LG50 contig count 3992 N50 contig - NG50 contig length difference 190 contig %A 29.78 contig %C 20.23 contig %G 20.25 contig %T 29.74 contig %N 0.00 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 Processing W11_scaffolds.fa.gz <-- Information for assembly 'W11_scaffolds.fa.gz' --> Number of scaffolds 17581 Total size of scaffolds 115453668 Total scaffold length as percentage of known genome size 102.6% Longest scaffold 665472 Shortest scaffold 200 Number of scaffolds > 500 nt 15531 88.3% Number of scaffolds > 1K nt 14163 80.6% Number of scaffolds > 10K nt 3995 22.7% Number of scaffolds > 100K nt 17 0.1% Number of scaffolds > 1M nt 0 0.0% Mean scaffold size 6567 Median scaffold size 4139 N50 scaffold length 11836 L50 scaffold count 2985 NG50 scaffold length 12127 LG50 scaffold count 2862 N50 scaffold - NG50 scaffold length difference 291 scaffold %A 29.75 scaffold %C 20.22 scaffold %G 20.24 scaffold %T 29.75 scaffold %N 0.04 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 2.7% Percentage of assembly in unscaffolded contigs 97.3% Average number of contigs per scaffold 1.0 Average length of break (>25 Ns) between contigs in scaffold 2 Number of contigs 17979 Number of contigs in scaffolds 783 Number of contigs not in scaffolds 17196 Total size of contigs 115441384 Longest contig 665472 Shortest contig 24 Number of contigs > 500 nt 15613 86.8% Number of contigs > 1K nt 14233 79.2% Number of contigs > 10K nt 3991 22.2% Number of contigs > 100K nt 17 0.1% Number of contigs > 1M nt 0 0.0% Mean contig size 6421 Median contig size 4023 N50 contig length 11777 L50 contig count 3009 NG50 contig length 12032 LG50 contig count 2885 N50 contig - NG50 contig length difference 255 contig %A 29.75 contig %C 20.23 contig %G 20.24 contig %T 29.75 contig %N 0.03 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 Processing W1_scaffolds.fa.gz <-- Information for assembly 'W1_scaffolds.fa.gz' --> Number of scaffolds 17187 Total size of scaffolds 115264020 Total scaffold length as percentage of known genome size 102.5% Longest scaffold 428217 Shortest scaffold 200 Number of scaffolds > 500 nt 14995 87.2% Number of scaffolds > 1K nt 13745 80.0% Number of scaffolds > 10K nt 4019 23.4% Number of scaffolds > 100K nt 19 0.1% Number of scaffolds > 1M nt 0 0.0% Mean scaffold size 6706 Median scaffold size 4444 N50 scaffold length 11936 L50 scaffold count 2996 NG50 scaffold length 12187 LG50 scaffold count 2882 N50 scaffold - NG50 scaffold length difference 251 scaffold %A 29.76 scaffold %C 20.22 scaffold %G 20.24 scaffold %T 29.73 scaffold %N 0.05 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 4.6% Percentage of assembly in unscaffolded contigs 95.4% Average number of contigs per scaffold 1.0 Average length of break (>25 Ns) between contigs in scaffold 3 Number of contigs 17759 Number of contigs in scaffolds 1119 Number of contigs not in scaffolds 16640 Total size of contigs 115245941 Longest contig 428217 Shortest contig 24 Number of contigs > 500 nt 15165 85.4% Number of contigs > 1K nt 13891 78.2% Number of contigs > 10K nt 3999 22.5% Number of contigs > 100K nt 19 0.1% Number of contigs > 1M nt 0 0.0% Mean contig size 6489 Median contig size 4237 N50 contig length 11765 L50 contig count 3039 NG50 contig length 12061 LG50 contig count 2923 N50 contig - NG50 contig length difference 296 contig %A 29.76 contig %C 20.23 contig %G 20.24 contig %T 29.74 contig %N 0.03 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 Processing W3_scaffolds.fa.gz <-- Information for assembly 'W3_scaffolds.fa.gz' --> Number of scaffolds 24858 Total size of scaffolds 115114064 Total scaffold length as percentage of known genome size 102.3% Longest scaffold 364958 Shortest scaffold 200 Number of scaffolds > 500 nt 21431 86.2% Number of scaffolds > 1K nt 18974 76.3% Number of scaffolds > 10K nt 2865 11.5% Number of scaffolds > 100K nt 20 0.1% Number of scaffolds > 1M nt 0 0.0% Mean scaffold size 4631 Median scaffold size 2991 N50 scaffold length 8180 L50 scaffold count 4158 NG50 scaffold length 8372 LG50 scaffold count 4000 N50 scaffold - NG50 scaffold length difference 192 scaffold %A 29.75 scaffold %C 20.22 scaffold %G 20.24 scaffold %T 29.74 scaffold %N 0.04 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 2.2% Percentage of assembly in unscaffolded contigs 97.8% Average number of contigs per scaffold 1.0 Average length of break (>25 Ns) between contigs in scaffold 1 Number of contigs 25328 Number of contigs in scaffolds 936 Number of contigs not in scaffolds 24392 Total size of contigs 115098816 Longest contig 364958 Shortest contig 24 Number of contigs > 500 nt 21464 84.7% Number of contigs > 1K nt 18997 75.0% Number of contigs > 10K nt 2864 11.3% Number of contigs > 100K nt 20 0.1% Number of contigs > 1M nt 0 0.0% Mean contig size 4544 Median contig size 2899 N50 contig length 8169 L50 contig count 4166 NG50 contig length 8357 LG50 contig count 4009 N50 contig - NG50 contig length difference 188 contig %A 29.76 contig %C 20.22 contig %G 20.25 contig %T 29.75 contig %N 0.03 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 Processing W5_scaffolds.fa.gz <-- Information for assembly 'W5_scaffolds.fa.gz' --> Number of scaffolds 19928 Total size of scaffolds 115373922 Total scaffold length as percentage of known genome size 102.6% Longest scaffold 665472 Shortest scaffold 200 Number of scaffolds > 500 nt 17625 88.4% Number of scaffolds > 1K nt 15967 80.1% Number of scaffolds > 10K nt 3465 17.4% Number of scaffolds > 100K nt 18 0.1% Number of scaffolds > 1M nt 0 0.0% Mean scaffold size 5790 Median scaffold size 3704 N50 scaffold length 10286 L50 scaffold count 3310 NG50 scaffold length 10560 LG50 scaffold count 3172 N50 scaffold - NG50 scaffold length difference 274 scaffold %A 29.74 scaffold %C 20.22 scaffold %G 20.24 scaffold %T 29.75 scaffold %N 0.05 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 3.8% Percentage of assembly in unscaffolded contigs 96.2% Average number of contigs per scaffold 1.0 Average length of break (>25 Ns) between contigs in scaffold 2 Number of contigs 20561 Number of contigs in scaffolds 1248 Number of contigs not in scaffolds 19313 Total size of contigs 115354785 Longest contig 665472 Shortest contig 24 Number of contigs > 500 nt 17728 86.2% Number of contigs > 1K nt 16050 78.1% Number of contigs > 10K nt 3441 16.7% Number of contigs > 100K nt 18 0.1% Number of contigs > 1M nt 0 0.0% Mean contig size 5610 Median contig size 3533 N50 contig length 10181 L50 contig count 3332 NG50 contig length 10465 LG50 contig count 3194 N50 contig - NG50 contig length difference 284 contig %A 29.75 contig %C 20.22 contig %G 20.24 contig %T 29.75 contig %N 0.03 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 Processing W6_scaffolds.fa.gz <-- Information for assembly 'W6_scaffolds.fa.gz' --> Number of scaffolds 25991 Total size of scaffolds 115297130 Total scaffold length as percentage of known genome size 102.5% Longest scaffold 364958 Shortest scaffold 200 Number of scaffolds > 500 nt 22503 86.6% Number of scaffolds > 1K nt 19817 76.2% Number of scaffolds > 10K nt 2658 10.2% Number of scaffolds > 100K nt 18 0.1% Number of scaffolds > 1M nt 0 0.0% Mean scaffold size 4436 Median scaffold size 2845 N50 scaffold length 7739 L50 scaffold count 4366 NG50 scaffold length 7936 LG50 scaffold count 4188 N50 scaffold - NG50 scaffold length difference 197 scaffold %A 29.77 scaffold %C 20.22 scaffold %G 20.24 scaffold %T 29.73 scaffold %N 0.04 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 2.4% Percentage of assembly in unscaffolded contigs 97.6% Average number of contigs per scaffold 1.0 Average length of break (>25 Ns) between contigs in scaffold 1 Number of contigs 26531 Number of contigs in scaffolds 1068 Number of contigs not in scaffolds 25463 Total size of contigs 115280793 Longest contig 364958 Shortest contig 24 Number of contigs > 500 nt 22554 85.0% Number of contigs > 1K nt 19855 74.8% Number of contigs > 10K nt 2648 10.0% Number of contigs > 100K nt 18 0.1% Number of contigs > 1M nt 0 0.0% Mean contig size 4345 Median contig size 2768 N50 contig length 7715 L50 contig count 4381 NG50 contig length 7899 LG50 contig count 4203 N50 contig - NG50 contig length difference 184 contig %A 29.77 contig %C 20.22 contig %G 20.25 contig %T 29.73 contig %N 0.03 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 Processing W7_scaffolds.fa.gz <-- Information for assembly 'W7_scaffolds.fa.gz' --> Number of scaffolds 18342 Total size of scaffolds 115217841 Total scaffold length as percentage of known genome size 102.4% Longest scaffold 428202 Shortest scaffold 200 Number of scaffolds > 500 nt 16085 87.7% Number of scaffolds > 1K nt 14740 80.4% Number of scaffolds > 10K nt 3839 20.9% Number of scaffolds > 100K nt 20 0.1% Number of scaffolds > 1M nt 0 0.0% Mean scaffold size 6282 Median scaffold size 4193 N50 scaffold length 11107 L50 scaffold count 3228 NG50 scaffold length 11284 LG50 scaffold count 3107 N50 scaffold - NG50 scaffold length difference 177 scaffold %A 29.77 scaffold %C 20.22 scaffold %G 20.24 scaffold %T 29.72 scaffold %N 0.05 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 4.2% Percentage of assembly in unscaffolded contigs 95.8% Average number of contigs per scaffold 1.0 Average length of break (>25 Ns) between contigs in scaffold 3 Number of contigs 18929 Number of contigs in scaffolds 1158 Number of contigs not in scaffolds 17771 Total size of contigs 115199002 Longest contig 428202 Shortest contig 24 Number of contigs > 500 nt 16226 85.7% Number of contigs > 1K nt 14862 78.5% Number of contigs > 10K nt 3815 20.2% Number of contigs > 100K nt 20 0.1% Number of contigs > 1M nt 0 0.0% Mean contig size 6086 Median contig size 3992 N50 contig length 11013 L50 contig count 3259 NG50 contig length 11204 LG50 contig count 3138 N50 contig - NG50 contig length difference 191 contig %A 29.77 contig %C 20.22 contig %G 20.24 contig %T 29.73 contig %N 0.03 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 Processing W8_scaffolds.fa.gz <-- Information for assembly 'W8_scaffolds.fa.gz' --> Number of scaffolds 18213 Total size of scaffolds 115424301 Total scaffold length as percentage of known genome size 102.6% Longest scaffold 339806 Shortest scaffold 200 Number of scaffolds > 500 nt 16167 88.8% Number of scaffolds > 1K nt 14818 81.4% Number of scaffolds > 10K nt 3826 21.0% Number of scaffolds > 100K nt 19 0.1% Number of scaffolds > 1M nt 0 0.0% Mean scaffold size 6337 Median scaffold size 4251 N50 scaffold length 11079 L50 scaffold count 3212 NG50 scaffold length 11326 LG50 scaffold count 3082 N50 scaffold - NG50 scaffold length difference 247 scaffold %A 29.76 scaffold %C 20.22 scaffold %G 20.24 scaffold %T 29.74 scaffold %N 0.04 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 3.5% Percentage of assembly in unscaffolded contigs 96.5% Average number of contigs per scaffold 1.0 Average length of break (>25 Ns) between contigs in scaffold 2 Number of contigs 18725 Number of contigs in scaffolds 1005 Number of contigs not in scaffolds 17720 Total size of contigs 115408235 Longest contig 339806 Shortest contig 24 Number of contigs > 500 nt 16266 86.9% Number of contigs > 1K nt 14908 79.6% Number of contigs > 10K nt 3803 20.3% Number of contigs > 100K nt 19 0.1% Number of contigs > 1M nt 0 0.0% Mean contig size 6163 Median contig size 4077 N50 contig length 11004 L50 contig count 3235 NG50 contig length 11256 LG50 contig count 3104 N50 contig - NG50 contig length difference 252 contig %A 29.76 contig %C 20.23 contig %G 20.24 contig %T 29.74 contig %N 0.03 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 Processing W9_scaffolds.fa.gz <-- Information for assembly 'W9_scaffolds.fa.gz' --> Number of scaffolds 19862 Total size of scaffolds 115154477 Total scaffold length as percentage of known genome size 102.4% Longest scaffold 665681 Shortest scaffold 110 Number of scaffolds > 500 nt 17404 87.6% Number of scaffolds > 1K nt 15765 79.4% Number of scaffolds > 10K nt 3524 17.7% Number of scaffolds > 100K nt 18 0.1% Number of scaffolds > 1M nt 0 0.0% Mean scaffold size 5798 Median scaffold size 3680 N50 scaffold length 10472 L50 scaffold count 3277 NG50 scaffold length 10727 LG50 scaffold count 3151 N50 scaffold - NG50 scaffold length difference 255 scaffold %A 29.79 scaffold %C 20.24 scaffold %G 20.24 scaffold %T 29.74 scaffold %N 0.00 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 0.0% Percentage of assembly in unscaffolded contigs 100.0% Average number of contigs per scaffold 1.0 Average length of break (>25 Ns) between contigs in scaffold 0 Number of contigs 19862 Number of contigs in scaffolds 0 Number of contigs not in scaffolds 19862 Total size of contigs 115154477 Longest contig 665681 Shortest contig 110 Number of contigs > 500 nt 17404 87.6% Number of contigs > 1K nt 15765 79.4% Number of contigs > 10K nt 3524 17.7% Number of contigs > 100K nt 18 0.1% Number of contigs > 1M nt 0 0.0% Mean contig size 5798 Median contig size 3680 N50 contig length 10472 L50 contig count 3277 NG50 contig length 10727 LG50 contig count 3151 N50 contig - NG50 contig length difference 255 contig %A 29.79 contig %C 20.24 contig %G 20.24 contig %T 29.74 contig %N 0.00 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 Processing X1_scaffolds.fa.gz <-- Information for assembly 'X1_scaffolds.fa.gz' --> Number of scaffolds 151203 Total size of scaffolds 159381550 Total scaffold length as percentage of known genome size 141.7% Longest scaffold 524383 Shortest scaffold 31 Number of scaffolds > 500 nt 15215 10.1% Number of scaffolds > 1K nt 14237 9.4% Number of scaffolds > 10K nt 5744 3.8% Number of scaffolds > 100K nt 18 0.0% Number of scaffolds > 1M nt 0 0.0% Mean scaffold size 1054 Median scaffold size 42 N50 scaffold length 15303 L50 scaffold count 3187 NG50 scaffold length 20226 LG50 scaffold count 1849 N50 scaffold - NG50 scaffold length difference 4923 scaffold %A 29.85 scaffold %C 20.14 scaffold %G 20.15 scaffold %T 29.82 scaffold %N 0.03 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 5733 Percentage of assembly in scaffolded contigs 3.5% Percentage of assembly in unscaffolded contigs 96.5% Average number of contigs per scaffold 1.0 Average length of break (>25 Ns) between contigs in scaffold 0 Number of contigs 151852 Number of contigs in scaffolds 1281 Number of contigs not in scaffolds 150571 Total size of contigs 159336958 Longest contig 524383 Shortest contig 31 Number of contigs > 500 nt 15373 10.1% Number of contigs > 1K nt 14388 9.5% Number of contigs > 10K nt 5724 3.8% Number of contigs > 100K nt 18 0.0% Number of contigs > 1M nt 0 0.0% Mean contig size 1049 Median contig size 43 N50 contig length 15165 L50 contig count 3210 NG50 contig length 20054 LG50 contig count 1861 N50 contig - NG50 contig length difference 4889 contig %A 29.86 contig %C 20.15 contig %G 20.16 contig %T 29.83 contig %N 0.00 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 5733 Processing X2_scaffolds.fa.gz <-- Information for assembly 'X2_scaffolds.fa.gz' --> Number of scaffolds 140598 Total size of scaffolds 161428633 Total scaffold length as percentage of known genome size 143.5% Longest scaffold 722867 Shortest scaffold 31 Number of scaffolds > 500 nt 14037 10.0% Number of scaffolds > 1K nt 13192 9.4% Number of scaffolds > 10K nt 5975 4.2% Number of scaffolds > 100K nt 18 0.0% Number of scaffolds > 1M nt 0 0.0% Mean scaffold size 1148 Median scaffold size 43 N50 scaffold length 16267 L50 scaffold count 3067 NG50 scaffold length 21533 LG50 scaffold count 1756 N50 scaffold - NG50 scaffold length difference 5266 scaffold %A 29.84 scaffold %C 20.14 scaffold %G 20.15 scaffold %T 29.84 scaffold %N 0.02 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 5708 Percentage of assembly in scaffolded contigs 2.7% Percentage of assembly in unscaffolded contigs 97.3% Average number of contigs per scaffold 1.0 Average length of break (>25 Ns) between contigs in scaffold 0 Number of contigs 141144 Number of contigs in scaffolds 1079 Number of contigs not in scaffolds 140065 Total size of contigs 161394359 Longest contig 722867 Shortest contig 31 Number of contigs > 500 nt 14106 10.0% Number of contigs > 1K nt 13274 9.4% Number of contigs > 10K nt 5959 4.2% Number of contigs > 100K nt 18 0.0% Number of contigs > 1M nt 0 0.0% Mean contig size 1143 Median contig size 43 N50 contig length 16191 L50 contig count 3078 NG50 contig length 21476 LG50 contig count 1761 N50 contig - NG50 contig length difference 5285 contig %A 29.85 contig %C 20.14 contig %G 20.16 contig %T 29.85 contig %N 0.00 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 5708 Processing X3_scaffolds.fa.gz <-- Information for assembly 'X3_scaffolds.fa.gz' --> Number of scaffolds 328797 Total size of scaffolds 126688003 Total scaffold length as percentage of known genome size 112.6% Longest scaffold 156082 Shortest scaffold 31 Number of scaffolds > 500 nt 30708 9.3% Number of scaffolds > 1K nt 25514 7.8% Number of scaffolds > 10K nt 1471 0.4% Number of scaffolds > 100K nt 2 0.0% Number of scaffolds > 1M nt 0 0.0% Mean scaffold size 385 Median scaffold size 39 N50 scaffold length 4611 L50 scaffold count 7832 NG50 scaffold length 5249 LG50 scaffold count 6388 N50 scaffold - NG50 scaffold length difference 638 scaffold %A 29.79 scaffold %C 20.20 scaffold %G 20.20 scaffold %T 29.81 scaffold %N 0.00 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 0.0% Percentage of assembly in unscaffolded contigs 100.0% Average number of contigs per scaffold 1.0 Average length of break (>25 Ns) between contigs in scaffold 0 Number of contigs 328797 Number of contigs in scaffolds 0 Number of contigs not in scaffolds 328797 Total size of contigs 126688003 Longest contig 156082 Shortest contig 31 Number of contigs > 500 nt 30708 9.3% Number of contigs > 1K nt 25514 7.8% Number of contigs > 10K nt 1471 0.4% Number of contigs > 100K nt 2 0.0% Number of contigs > 1M nt 0 0.0% Mean contig size 385 Median contig size 39 N50 contig length 4611 L50 contig count 7832 NG50 contig length 5249 LG50 contig count 6388 N50 contig - NG50 contig length difference 638 contig %A 29.79 contig %C 20.20 contig %G 20.20 contig %T 29.81 contig %N 0.00 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0 Processing X4_scaffolds.fa.gz <-- Information for assembly 'X4_scaffolds.fa.gz' --> Number of scaffolds 173372 Total size of scaffolds 127031925 Total scaffold length as percentage of known genome size 112.9% Longest scaffold 541257 Shortest scaffold 31 Number of scaffolds > 500 nt 11920 6.9% Number of scaffolds > 1K nt 10955 6.3% Number of scaffolds > 10K nt 4267 2.5% Number of scaffolds > 100K nt 18 0.0% Number of scaffolds > 1M nt 0 0.0% Mean scaffold size 733 Median scaffold size 39 N50 scaffold length 15662 L50 scaffold count 2370 NG50 scaffold length 17580 LG50 scaffold count 1933 N50 scaffold - NG50 scaffold length difference 1918 scaffold %A 29.79 scaffold %C 20.19 scaffold %G 20.17 scaffold %T 29.76 scaffold %N 0.08 scaffold %non-ACGTN 0.01 Number of scaffold non-ACGTN nt 17573 Percentage of assembly in scaffolded contigs 18.8% Percentage of assembly in unscaffolded contigs 81.2% Average number of contigs per scaffold 1.0 Average length of break (>25 Ns) between contigs in scaffold 0 Number of contigs 175163 Number of contigs in scaffolds 3414 Number of contigs not in scaffolds 171749 Total size of contigs 126937664 Longest contig 541257 Shortest contig 31 Number of contigs > 500 nt 13036 7.4% Number of contigs > 1K nt 11949 6.8% Number of contigs > 10K nt 4209 2.4% Number of contigs > 100K nt 18 0.0% Number of contigs > 1M nt 0 0.0% Mean contig size 725 Median contig size 39 N50 contig length 14169 L50 contig count 2605 NG50 contig length 16018 LG50 contig count 2124 N50 contig - NG50 contig length difference 1849 contig %A 29.82 contig %C 20.21 contig %G 20.18 contig %T 29.78 contig %N 0.00 contig %non-ACGTN 0.01 Number of contig non-ACGTN nt 17573 Processing X5_scaffolds.fa.gz <-- Information for assembly 'X5_scaffolds.fa.gz' --> Number of scaffolds 172923 Total size of scaffolds 126671540 Total scaffold length as percentage of known genome size 112.6% Longest scaffold 541257 Shortest scaffold 31 Number of scaffolds > 500 nt 11936 6.9% Number of scaffolds > 1K nt 10957 6.3% Number of scaffolds > 10K nt 4263 2.5% Number of scaffolds > 100K nt 18 0.0% Number of scaffolds > 1M nt 0 0.0% Mean scaffold size 733 Median scaffold size 39 N50 scaffold length 15505 L50 scaffold count 2386 NG50 scaffold length 17451 LG50 scaffold count 1956 N50 scaffold - NG50 scaffold length difference 1946 scaffold %A 29.76 scaffold %C 20.18 scaffold %G 20.18 scaffold %T 29.79 scaffold %N 0.08 scaffold %non-ACGTN 0.01 Number of scaffold non-ACGTN nt 17326 Percentage of assembly in scaffolded contigs 18.3% Percentage of assembly in unscaffolded contigs 81.7% Average number of contigs per scaffold 1.0 Average length of break (>25 Ns) between contigs in scaffold 0 Number of contigs 174679 Number of contigs in scaffolds 3352 Number of contigs not in scaffolds 171327 Total size of contigs 126580753 Longest contig 541257 Shortest contig 31 Number of contigs > 500 nt 13009 7.4% Number of contigs > 1K nt 11915 6.8% Number of contigs > 10K nt 4210 2.4% Number of contigs > 100K nt 18 0.0% Number of contigs > 1M nt 0 0.0% Mean contig size 725 Median contig size 39 N50 contig length 14168 L50 contig count 2614 NG50 contig length 15872 LG50 contig count 2144 N50 contig - NG50 contig length difference 1704 contig %A 29.78 contig %C 20.20 contig %G 20.19 contig %T 29.81 contig %N 0.00 contig %non-ACGTN 0.01 Number of contig non-ACGTN nt 17326 Processing X6_scaffolds.fa.gz <-- Information for assembly 'X6_scaffolds.fa.gz' --> Number of scaffolds 311185 Total size of scaffolds 126049808 Total scaffold length as percentage of known genome size 112.0% Longest scaffold 156082 Shortest scaffold 31 Number of scaffolds > 500 nt 30949 9.9% Number of scaffolds > 1K nt 25660 8.2% Number of scaffolds > 10K nt 1443 0.5% Number of scaffolds > 100K nt 2 0.0% Number of scaffolds > 1M nt 0 0.0% Mean scaffold size 405 Median scaffold size 41 N50 scaffold length 4601 L50 scaffold count 7832 NG50 scaffold length 5192 LG50 scaffold count 6446 N50 scaffold - NG50 scaffold length difference 591 scaffold %A 29.80 scaffold %C 20.22 scaffold %G 20.21 scaffold %T 29.77 scaffold %N 0.00 scaffold %non-ACGTN 0.00 Number of scaffold non-ACGTN nt 0 Percentage of assembly in scaffolded contigs 0.0% Percentage of assembly in unscaffolded contigs 100.0% Average number of contigs per scaffold 1.0 Average length of break (>25 Ns) between contigs in scaffold 0 Number of contigs 311185 Number of contigs in scaffolds 0 Number of contigs not in scaffolds 311185 Total size of contigs 126049808 Longest contig 156082 Shortest contig 31 Number of contigs > 500 nt 30949 9.9% Number of contigs > 1K nt 25660 8.2% Number of contigs > 10K nt 1443 0.5% Number of contigs > 100K nt 2 0.0% Number of contigs > 1M nt 0 0.0% Mean contig size 405 Median contig size 41 N50 contig length 4601 L50 contig count 7832 NG50 contig length 5192 LG50 contig count 6446 N50 contig - NG50 contig length difference 591 contig %A 29.80 contig %C 20.22 contig %G 20.21 contig %T 29.77 contig %N 0.00 contig %non-ACGTN 0.00 Number of contig non-ACGTN nt 0